Python C module for creating suffix, LCP and BWT arrays with UTF-8 text.
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Updated
Jul 16, 2019 - C
Python C module for creating suffix, LCP and BWT arrays with UTF-8 text.
Bioinformatics course project: Computing the LCP array based on BWT
Disk-based approach to compute the BWT and the LCP of a set of strings
Multi-threaded approach to compute the BWT and the LCP array of a set of strings
Burrows-Wheeler transform and LCP array construction in constant space [IWOCA'15, JDA 2017]
External memory BWT and LCP computation for sequence collections with applications [WABI'18, AMB 2019]
Algorithm design course in my forth semester of university
Data Structures naively implemented in Kotlin for learning purpose
Cache-friendly, Parallel, and Samplesort-based Constructor for Suffix Arrays and LCP Arrays
Optimal suffix sorting and LCP array construction for constant alphabets [IPL 2017]
A lightweight suffix-sorting library enhanced with LCP construction
Induced Suffix Array and LCP construction based on the SAIS algorithm.
Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,
Generalized enhanced suffix array construction in external memory [CPM'13, AMB 2017]
Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]
gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]
msufsort parallel suffix array construction algorithm
Succinct Data Structure Library 3.0
libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm.
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