mlst
Here are 29 public repositories matching this topic...
BSR-Based Allele Calling Algorithm
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Sep 9, 2024 - HTML
Epitypification pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
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Aug 21, 2024 - Nextflow
cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and isolate clustering based on NCBI Pathogen Detection Project for Cronobacter.
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Jul 16, 2024 - Nextflow
multi-locus sequence type clade classifier for Clostridioides difficile
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Jun 28, 2024 - Python
A collection of bioinformatics tools for use with galaxy written at Quadram Institute
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Jun 4, 2024 - HTML
Run mlst on multiple samples with integrated quality control.
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May 9, 2024 - Nextflow
In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
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May 8, 2024 - Python
Enterobase scheme scraper. Download and list available schemes from Enterobase, and find their last modification date and time.
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May 4, 2024 - R
Pathogen whole genome sequence (WGS) data analysis pipeline
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May 2, 2024 - Nextflow
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
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May 2, 2024 - Python
stringMLST datasets
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Mar 18, 2023
MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
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Mar 2, 2023 - Python
A tool for conducting a gene screen on assemblies, producing an SRST2-like output.
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Dec 28, 2022 - Python
Rapid, in silico characterization of Bacillus cereus group isolates using WGS data
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Sep 29, 2022
mlst2dist.py computes a distance matrix from a chewBBACA MLST alleles table, using Hamming Distance modified with correction for missing data
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Apr 19, 2022 - Python
Scripts used to generate the analyses and figures in the paper "Systems-based approach for optimization of a scalable bacterial ST mapping assembly-free algorithm".
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Jan 10, 2022 - Shell
GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html
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Nov 27, 2021 - JavaScript
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