Schema and generated objects for biolink data model and upper ontology

Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.

MyVariant.info: A BioThings API for human variant annotations

This repo hosts the API metadata for the Translator project

KGX is a Python library for exchanging Knowledge Graphs

BioThings API framework - Making high-performance API for biological annotation data

Autonomous relay system for NCATS Biomedical Data Translator

Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)

MyGene.info: A BioThings API for gene annotations

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

Official Developer Documentation repository for the Biomedical Data Translator

Intelligent APIs for a more connected web: https://smart-api.info

BioThings Explorer: a schema-based client for API interoperability

MyChem.info: A BioThings API for chemical/drug annotations

TRAPI service for BioThings Explorer

A collection of useful python functions for looking up information and working with the Biolink Model

Activities related to the overall project management for Translator

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)

debugging biological networks to reach coherence, completeness and consistency