Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.

Schema and generated objects for biolink data model and upper ontology

MyGene.info: A BioThings API for gene annotations

KGX is a Python library for exchanging Knowledge Graphs

MyVariant.info: A BioThings API for human variant annotations

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

BioThings API framework - Making high-performance API for biological annotation data

debugging biological networks to reach coherence, completeness and consistency

Integrated OBO ontology store

Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)

Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)

Intelligent APIs for a more connected web: https://smart-api.info

A collection of useful python functions for looking up information and working with the Biolink Model

MyChem.info: A BioThings API for chemical/drug annotations

Extracting gene sets from published pathway figures

BioThings Explorer: a schema-based client for API interoperability

This repo hosts the API metadata for the Translator project

Service that produces Translator compliant nodes given a curie

TRAPI service for BioThings Explorer