pdb-parser
Here are 24 public repositories matching this topic...
A complicated method to download all PDB sequences for free has been explained here. Also, a youtube video has been made for easier understanding. Check out the link in ReadME. The downloaded sequences are further cleaned for modeling purposes.
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Mar 15, 2019 - Python
Python program that can identify the residues interacting between chains of a complex protein.
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Dec 13, 2019 - Python
Bioinformatics Toolbox
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Apr 28, 2020 - C++
Java command line tool for fetching, parsing and displaying in a Jmol window all interactions zones between proteins or molecular complexes
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Nov 13, 2020 - Java
The scope of this module is downloading or reading PDB-Files and subsequently parsing them
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Jan 27, 2022 - Python
Benchmark for the most popular managed PDB readers.
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Mar 9, 2022 - C#
C++ Utilities, DLL for GUI, Layout Managers, PDB Symbol Parser, Input(Mouse double click in less than 100ms fix), Raw disk data writer, And much more.
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Mar 11, 2022 - C
Użyteczności związane z parsowaniem plików .pdb oraz zdalnym dostępem do baz danych Pfam i UniProt.
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May 31, 2022 - Python
Prosty parser plików .pdb napisany jako natywne rozszerzenie pythonowe.
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Jun 10, 2022 - Rust
Utility to parse PDB(Protein Data Bank) file format 3.3 into JSON format
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Jul 21, 2022 - TypeScript
My summer practice at the HSE university
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Aug 22, 2022 - Jupyter Notebook
PDB parser in Haskell
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Mar 19, 2023 - Haskell
Cython implementation of PDB -> DataFrame parsing
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Jun 26, 2023 - Cython
This is a Protein Visualization demo project built with Unity3D. It reads and visualizes .pdb files. The current visualizations includes space-filling, balls-and-sticks, licorice and backbone diagrams, and...the seamless transition between these diagrams. The repository is keeping to update.
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Dec 9, 2023 - C#
Fast and cross-platform parser for Microsoft PDB files
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Feb 6, 2024 - C#
A Python-based parser and analysis tool for Protein Data Bank (PDB) files. The project aims to facilitate the manipulation of PDB files, enabling users to extract and compute various structural properties of proteins, such as counting amino acid residues and calculating distances between atoms.
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Feb 21, 2024 - Python
Super lightweight and fast mmCIF/PDB/MOL2 file parser into Pandas DataFrames and backwards writer.
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Oct 21, 2024 - Python
A bunch of parsers for PE and PDB formats in C++
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May 15, 2024 - C++
PACKMAN: PACKing and Motion ANalysis
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Jul 1, 2024 - Python
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