Type 2 Diabetes Mellitus phenotype as a structured phenotype definition, as produced by the Phenoflow architecture.

The QC software for the OBO version of HPO

Code used to generate Genomes to Fields data in BrAPI format from Imagebreed for use by the Agricultural Research Data Network (ARDN)

HDR UK National Phenotype Library

Automatic estimation of storage root length, diameter and volume.

This is a public repository for relevant code from the publication of the same name.

Scripts for the HEB25_population

Focusing the GWAS Lens on days to flower using latent variable phenotypes derived from global multi-environment trials. The Plant Genome. (2022) e20269.

Explore the phenome ✨🎆✨

HPO web browser created with Vaadin

my snippets and notes for compact plants phenomics center at WSU

Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae

Scaleable multitask Network

R scripts for the Zoological Journal of the Linnean Society thalattosuchian phylogenetic analyses (https://academic.oup.com/zoolinnean/article-abstract/200/2/547/7513652) and (https://academic.oup.com/zoolinnean/article-abstract/201/3/zlae079/7713265)

LI Detector analytical pipeline for colony-based high-throughput screens.

This is repository of my bachelor degree graduation work. Method was developed in purpose to upgrade accuracy and efficiency of wheat spikelets detection on images.

🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms

The QC software for the OWL version of HPO (only text-checks, not so much logic included)

Computation of root phenes from 3D point clouds.