A bookdown project of best programmer practices for intermediate R and Python programmers
Reproducing the results reported in a preprint during ReproHack2019 (Leiden).
A Python package for data archiving and linking with code
Python utility functions
Code and data to recreate figures and analyses for our Scientific Reports paper "Cold exposure induces dynamic, heterogeneous alterations in human brown adipose tissue lipid content".
Python Citations Generator
Jupyter Notebooks to reproduce analysis with dief R package
R utility functions
Reproducible analysis with R, Python and Snakemake via Conda
An R package for data archiving and linking with code
Seeking alternative stable states in a deep lake (Bruel et al 2018) — reproduce analysis.
Practical Guide to Reproducibility in Bioinformatics (Work In Progress)
A reproducible analysis of environmental data - from hardware to plot
Epidemiologia de Doenças de Plantas Aplicada com R
a Python toolbox for reproducible analysis and visualization of NeuroPhysiological data.
TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist
A curated list of reproducible research case studies, projects, tutorials, and media
Live code in Pandoc Markdown
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