ribosome-profiling
Here are 33 public repositories matching this topic...
Pipeline for Ribosome Profiling Data
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Jul 5, 2023 - Groovy
A tool for accurately detecting actively translating ORFs from Ribo-seq data
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Apr 13, 2024 - Python
Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
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Oct 5, 2024 - Python
uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)
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Jul 30, 2019 - Python
Ribo-DT is a snakemake pipeline to infer single-codon and codon-pair dwell times as well as gene flux from ribosome profiling data using generalized linear model (GLM) with negative binomial noise model (Gobet et al., PNAS, 2020).
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Nov 1, 2023 - R
We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, …
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Aug 1, 2024 - Python
Riborex: Fast and flexible identification of differential translation from Ribo-seq data
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Apr 9, 2021 - R
Analyze ribosome profiling for organisms have ncbi annotation
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Oct 10, 2017 - Jupyter Notebook
Ribosome profiling mapping quality control tool
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Apr 20, 2021 - Python
Workflow for Ribosome profiling data start and stop codon analysis.
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Mar 17, 2019 - Python
Pipeline and scripts for the comparative analysis of ribosome profiling and matched RNA sequencing data between organs and across species.
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Apr 9, 2021 - R
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Jun 9, 2023 - HTML
A comprehensive pipeline for Ribo-seq data analysis
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Mar 18, 2024 - Shell
RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).
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Aug 4, 2018 - Python
Reanalysis of ribosome profiling datasets reveals a novel function of rocaglamide A in perturbing the dynamics of translation elongation via eIF4A
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Dec 28, 2022 - Python
Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.
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Jul 19, 2018 - R
Snakemake pipeline for Ribo-Seq analysis
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May 31, 2018 - Python
Transformers for ribosome density prediction
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Oct 7, 2024 - Jupyter Notebook
pilot pipeline that includes tool containerization
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Aug 16, 2023 - Shell
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