Merge pull request #154 from trigaten/Graph-Regeneration

Graph regeneration

Author: trigaten

.pre-commit-config.yaml

@@ -2,4 +2,5 @@ repos:
 -   repo: https://github.com/psf/black
     rev: 23.10.1
     hooks:
-    -   id: black
+    -   id: black
+        exclude: src/prompt_systematic_review/experiments/find_internal_reference_count.py

data/cleaned_complete_paper_references.json

@@ -18,6 +18,8 @@ load_dotenv
 tomotopy
 wordcloud
 pytest-dotenv
+python-dotenv
+networkx
 scipy
 networkx
 tomotopy
@@ -33,5 +35,6 @@ anytree==2.12.1
 urllib3<2
 acl-anthology-py
 seaborn
+requests
 tenacity
 -e .