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gbnorm - A graph-based algorithm for RNA-seq data normalization

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Notes

  • Release v0.99.1 DOI is the first working snapshot of gbnorm. This version was used in the paper https://doi.org/10.1371/journal.pone.0227760. In this implementation, all the functions taking expression matrix as an input assume that it is samples (rows) x features (columns).
  • Release v0.99.2 made changes to the normalize.___() functions that take expression matrix as an input. The input matrix should now be features (rows) x samples (columns).

License

GNU GPLv3