diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml new file mode 100644 index 00000000..ea2b7cb6 --- /dev/null +++ b/.github/workflows/ci.yaml @@ -0,0 +1,25 @@ +name: CI + +on: + push: + pull_request: + types: [opened, synchronize] + +jobs: + Security: + name: Security Pipeline + uses: uc-cdis/.github/.github/workflows/securitypipeline.yaml@master + with: + python-poetry: 'false' + secrets: inherit # pragma: allowlist secret + UnitTest: + name: Python Unit Test + uses: uc-cdis/.github/.github/workflows/python_unit_test.yaml@master + strategy: + matrix: + # the versions for which we require the CI to pass on PRs can + # be updated in the repo settings (branch rules) + version: ['3.9', '3.10','3.11','3.12','3.13'] + fail-fast: false # run for all versions even if one of them fails + with: + python-version: ${{matrix.version}} diff --git a/.travis.yml b/.travis.yml deleted file mode 100644 index 701be6a6..00000000 --- a/.travis.yml +++ /dev/null @@ -1,32 +0,0 @@ -dist: jammy -language: python -python: -- '3.9' -sudo: false -env: - global: - - PIPENV_IGNORE_VIRTUALENVS=1 - - secure: 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 -install: -- pip install pipenv -- pipenv install --dev --deploy --python `which python` -- pipenv graph -script: pipenv run pytest -vv -before_deploy: -- sed -i.bak "s/=get_version()/='$TRAVIS_TAG'/g" setup.py -- cat setup.py -- if [ $(python setup.py --version) == '0.0.0' ]; then travis_terminate 1; fi -deploy: - provider: pypi - user: uc-ctds - skip_existing: true - skip_cleanup: true - on: - python: 3.9 - repo: uc-cdis/indexclient - tags: true - password: - secure: 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 -after_deploy: -- pipenv run pip install gen3git -- pipenv run gen3git release diff --git a/Pipfile b/Pipfile deleted file mode 100644 index a70ff278..00000000 --- a/Pipfile +++ /dev/null @@ -1,17 +0,0 @@ -[[source]] -name = "pypi" -url = "https://pypi.org/simple" -verify_ssl = true - -[packages] -requests = "*" -indexclient = {editable = true, path = "."} - -[dev-packages] -pytest = "*" -mock = "*" -cdisutilstest = {editable = true, git = "https://github.com/uc-cdis/cdisutils-test.git", ref = "1.0.0"} -indexd = {git = "https://github.com/uc-cdis/indexd.git", ref = "5.0.1"} - -[requires] -python_version = "3.9" diff --git a/Pipfile.lock b/Pipfile.lock deleted file mode 100644 index 8063bde8..00000000 --- a/Pipfile.lock +++ /dev/null @@ -1,855 +0,0 @@ -{ - "_meta": { - "hash": { - "sha256": "35025214197b0c499af762cfa16964ea979e55bca6e181f491e436f9af844df8" - }, - "pipfile-spec": 6, - "requires": { - "python_version": "3.9" - }, - "sources": [ - { - "name": "pypi", - "url": 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