From 7b9c9d292d304fb0981cdf827a48477ba5e5b41e Mon Sep 17 00:00:00 2001
From: Nina <randorf@uchicago.edu>
Date: Fri, 20 Feb 2026 13:57:29 -0600
Subject: [PATCH 1/2] work in progress - deprecate old vers control

---
 .github/workflows/ci.yaml |  25 ++
 .travis.yml               |  32 --
 Pipfile                   |  17 -
 Pipfile.lock              | 855 --------------------------------------
 pyproject.toml            |  21 +
 5 files changed, 46 insertions(+), 904 deletions(-)
 create mode 100644 .github/workflows/ci.yaml
 delete mode 100644 .travis.yml
 delete mode 100644 Pipfile
 delete mode 100644 Pipfile.lock
 create mode 100644 pyproject.toml

diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
new file mode 100644
index 00000000..85ae87b9
--- /dev/null
+++ b/.github/workflows/ci.yaml
@@ -0,0 +1,25 @@
+name: CI
+
+on:
+  push:
+  pull_request:
+    types: [opened, synchronize]
+
+jobs:
+  Security:
+    name: Security Pipeline
+    uses: uc-cdis/.github/.github/workflows/securitypipeline.yaml@master
+    with:
+       python-poetry: 'false'
+    secrets: inherit # pragma: allowlist secret
+  UnitTest:
+    name: Python Unit Test
+    uses: uc-cdis/.github/.github/workflows/python_unit_test.yaml@master
+    strategy:
+      matrix:
+      # the versions for which we require the CI to pass on PRs can
+      # be updated in the repo settings (branch rules)
+        version: ['3.13']
+      fail-fast: false # run for all versions even if one of them fails
+    with:
+        python-version: ${{matrix.version}}
diff --git a/.travis.yml b/.travis.yml
deleted file mode 100644
index 701be6a6..00000000
--- a/.travis.yml
+++ /dev/null
@@ -1,32 +0,0 @@
-dist: jammy
-language: python
-python:
-- '3.9'
-sudo: false
-env:
-  global:
-  - PIPENV_IGNORE_VIRTUALENVS=1
-  - secure: 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
-install:
-- pip install pipenv
-- pipenv install --dev --deploy --python `which python`
-- pipenv graph
-script: pipenv run pytest -vv
-before_deploy:
-- sed -i.bak "s/=get_version()/='$TRAVIS_TAG'/g" setup.py
-- cat setup.py
-- if [ $(python setup.py --version) == '0.0.0' ]; then travis_terminate 1; fi
-deploy:
-  provider: pypi
-  user: uc-ctds
-  skip_existing: true
-  skip_cleanup: true
-  on:
-    python: 3.9
-    repo: uc-cdis/indexclient
-    tags: true
-  password:
-    secure: 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
-after_deploy:
-- pipenv run pip install gen3git
-- pipenv run gen3git release
diff --git a/Pipfile b/Pipfile
deleted file mode 100644
index a70ff278..00000000
--- a/Pipfile
+++ /dev/null
@@ -1,17 +0,0 @@
-[[source]]
-name = "pypi"
-url = "https://pypi.org/simple"
-verify_ssl = true
-
-[packages]
-requests = "*"
-indexclient = {editable = true, path = "."}
-
-[dev-packages]
-pytest = "*"
-mock = "*"
-cdisutilstest = {editable = true, git = "https://github.com/uc-cdis/cdisutils-test.git", ref = "1.0.0"}
-indexd = {git = "https://github.com/uc-cdis/indexd.git", ref = "5.0.1"}
-
-[requires]
-python_version = "3.9"
diff --git a/Pipfile.lock b/Pipfile.lock
deleted file mode 100644
index 8063bde8..00000000
--- a/Pipfile.lock
+++ /dev/null
@@ -1,855 +0,0 @@
-{
-    "_meta": {
-        "hash": {
-            "sha256": "35025214197b0c499af762cfa16964ea979e55bca6e181f491e436f9af844df8"
-        },
-        "pipfile-spec": 6,
-        "requires": {
-            "python_version": "3.9"
-        },
-        "sources": [
-            {
-                "name": "pypi",
-                "url": "https://pypi.org/simple",
-                "verify_ssl": true
-            }
-        ]
-    },
-    "default": {
-        "certifi": {
-            "hashes": [
-                "sha256:0f0d56dc5a6ad56fd4ba36484d6cc34451e1c6548c61daad8c320169f91eddc7",
-                "sha256:c6c2e98f5c7869efca1f8916fed228dd91539f9f1b444c314c06eef02980c716"
-            ],
-            "markers": "python_version >= '3.6'",
-            "version": "==2023.5.7"
-        },
-        "charset-normalizer": {
-            "hashes": [
-                "sha256:04afa6387e2b282cf78ff3dbce20f0cc071c12dc8f685bd40960cc68644cfea6",
-                "sha256:04eefcee095f58eaabe6dc3cc2262f3bcd776d2c67005880894f447b3f2cb9c1",
-                "sha256:0be65ccf618c1e7ac9b849c315cc2e8a8751d9cfdaa43027d4f6624bd587ab7e",
-                "sha256:0c95f12b74681e9ae127728f7e5409cbbef9cd914d5896ef238cc779b8152373",
-                "sha256:0ca564606d2caafb0abe6d1b5311c2649e8071eb241b2d64e75a0d0065107e62",
-                "sha256:10c93628d7497c81686e8e5e557aafa78f230cd9e77dd0c40032ef90c18f2230",
-                "sha256:11d117e6c63e8f495412d37e7dc2e2fff09c34b2d09dbe2bee3c6229577818be",
-                "sha256:11d3bcb7be35e7b1bba2c23beedac81ee893ac9871d0ba79effc7fc01167db6c",
-                "sha256:12a2b561af122e3d94cdb97fe6fb2bb2b82cef0cdca131646fdb940a1eda04f0",
-                "sha256:12d1a39aa6b8c6f6248bb54550efcc1c38ce0d8096a146638fd4738e42284448",
-                "sha256:1435ae15108b1cb6fffbcea2af3d468683b7afed0169ad718451f8db5d1aff6f",
-                "sha256:1c60b9c202d00052183c9be85e5eaf18a4ada0a47d188a83c8f5c5b23252f649",
-                "sha256:1e8fcdd8f672a1c4fc8d0bd3a2b576b152d2a349782d1eb0f6b8e52e9954731d",
-                "sha256:20064ead0717cf9a73a6d1e779b23d149b53daf971169289ed2ed43a71e8d3b0",
-                "sha256:21fa558996782fc226b529fdd2ed7866c2c6ec91cee82735c98a197fae39f706",
-                "sha256:22908891a380d50738e1f978667536f6c6b526a2064156203d418f4856d6e86a",
-                "sha256:3160a0fd9754aab7d47f95a6b63ab355388d890163eb03b2d2b87ab0a30cfa59",
-                "sha256:322102cdf1ab682ecc7d9b1c5eed4ec59657a65e1c146a0da342b78f4112db23",
-                "sha256:34e0a2f9c370eb95597aae63bf85eb5e96826d81e3dcf88b8886012906f509b5",
-                "sha256:3573d376454d956553c356df45bb824262c397c6e26ce43e8203c4c540ee0acb",
-                "sha256:3747443b6a904001473370d7810aa19c3a180ccd52a7157aacc264a5ac79265e",
-                "sha256:38e812a197bf8e71a59fe55b757a84c1f946d0ac114acafaafaf21667a7e169e",
-                "sha256:3a06f32c9634a8705f4ca9946d667609f52cf130d5548881401f1eb2c39b1e2c",
-                "sha256:3a5fc78f9e3f501a1614a98f7c54d3969f3ad9bba8ba3d9b438c3bc5d047dd28",
-                "sha256:3d9098b479e78c85080c98e1e35ff40b4a31d8953102bb0fd7d1b6f8a2111a3d",
-                "sha256:3dc5b6a8ecfdc5748a7e429782598e4f17ef378e3e272eeb1340ea57c9109f41",
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-                "sha256:53d0a3fa5f8af98a1e261de6a3943ca631c526635eb5817a87a59d9a57ebf48f",
-                "sha256:5f008525e02908b20e04707a4f704cd286d94718f48bb33edddc7d7b584dddc1",
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-                "sha256:6baf0baf0d5d265fa7944feb9f7451cc316bfe30e8df1a61b1bb08577c554f31",
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-                "sha256:b82fab78e0b1329e183a65260581de4375f619167478dddab510c6c6fb04d9b6",
-                "sha256:bd7163182133c0c7701b25e604cf1611c0d87712e56e88e7ee5d72deab3e76b5",
-                "sha256:c36bcbc0d5174a80d6cccf43a0ecaca44e81d25be4b7f90f0ed7bcfbb5a00909",
-                "sha256:c3af8e0f07399d3176b179f2e2634c3ce9c1301379a6b8c9c9aeecd481da494f",
-                "sha256:c84132a54c750fda57729d1e2599bb598f5fa0344085dbde5003ba429a4798c0",
-                "sha256:cb7b2ab0188829593b9de646545175547a70d9a6e2b63bf2cd87a0a391599324",
-                "sha256:cca4def576f47a09a943666b8f829606bcb17e2bc2d5911a46c8f8da45f56755",
-                "sha256:cf6511efa4801b9b38dc5546d7547d5b5c6ef4b081c60b23e4d941d0eba9cbeb",
-                "sha256:d16fd5252f883eb074ca55cb622bc0bee49b979ae4e8639fff6ca3ff44f9f854",
-                "sha256:d2686f91611f9e17f4548dbf050e75b079bbc2a82be565832bc8ea9047b61c8c",
-                "sha256:d7fc3fca01da18fbabe4625d64bb612b533533ed10045a2ac3dd194bfa656b60",
-                "sha256:dd5653e67b149503c68c4018bf07e42eeed6b4e956b24c00ccdf93ac79cdff84",
-                "sha256:de5695a6f1d8340b12a5d6d4484290ee74d61e467c39ff03b39e30df62cf83a0",
-                "sha256:e0ac8959c929593fee38da1c2b64ee9778733cdf03c482c9ff1d508b6b593b2b",
-                "sha256:e1b25e3ad6c909f398df8921780d6a3d120d8c09466720226fc621605b6f92b1",
-                "sha256:e633940f28c1e913615fd624fcdd72fdba807bf53ea6925d6a588e84e1151531",
-                "sha256:e89df2958e5159b811af9ff0f92614dabf4ff617c03a4c1c6ff53bf1c399e0e1",
-                "sha256:ea9f9c6034ea2d93d9147818f17c2a0860d41b71c38b9ce4d55f21b6f9165a11",
-                "sha256:f645caaf0008bacf349875a974220f1f1da349c5dbe7c4ec93048cdc785a3326",
-                "sha256:f8303414c7b03f794347ad062c0516cee0e15f7a612abd0ce1e25caf6ceb47df",
-                "sha256:fca62a8301b605b954ad2e9c3666f9d97f63872aa4efcae5492baca2056b74ab"
-            ],
-            "markers": "python_full_version >= '3.7.0'",
-            "version": "==3.1.0"
-        },
-        "idna": {
-            "hashes": [
-                "sha256:814f528e8dead7d329833b91c5faa87d60bf71824cd12a7530b5526063d02cb4",
-                "sha256:90b77e79eaa3eba6de819a0c442c0b4ceefc341a7a2ab77d7562bf49f425c5c2"
-            ],
-            "markers": "python_version >= '3.5'",
-            "version": "==3.4"
-        },
-        "indexclient": {
-            "editable": true,
-            "path": "."
-        },
-        "requests": {
-            "hashes": [
-                "sha256:58cd2187c01e70e6e26505bca751777aa9f2ee0b7f4300988b709f44e013003f",
-                "sha256:942c5a758f98d790eaed1a29cb6eefc7ffb0d1cf7af05c3d2791656dbd6ad1e1"
-            ],
-            "index": "pypi",
-            "version": "==2.31.0"
-        },
-        "urllib3": {
-            "hashes": [
-                "sha256:48e7fafa40319d358848e1bc6809b208340fafe2096f1725d05d67443d0483d1",
-                "sha256:bee28b5e56addb8226c96f7f13ac28cb4c301dd5ea8a6ca179c0b9835e032825"
-            ],
-            "markers": "python_version >= '3.7'",
-            "version": "==2.0.3"
-        }
-    },
-    "develop": {
-        "alembic": {
-            "hashes": [
-                "sha256:6a810a6b012c88b33458fceb869aef09ac75d6ace5291915ba7fae44de372c01",
-                "sha256:dc871798a601fab38332e38d6ddb38d5e734f60034baeb8e2db5b642fccd8ab8"
-            ],
-            "markers": "python_version >= '3.7'",
-            "version": "==1.11.1"
-        },
-        "anyio": {
-            "hashes": [
-                "sha256:275d9973793619a5374e1c89a4f4ad3f4b0a5510a2b5b939444bee8f4c4d37ce",
-                "sha256:eddca883c4175f14df8aedce21054bfca3adb70ffe76a9f607aef9d7fa2ea7f0"
-            ],
-            "markers": "python_version >= '3.7'",
-            "version": "==3.7.0"
-        },
-        "attrs": {
-            "hashes": [
-                "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04",
-                "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"
-            ],
-            "markers": "python_version >= '3.7'",
-            "version": "==23.1.0"
-        },
-        "authlib": {
-            "hashes": [
-                "sha256:3a226f231e962a16dd5f6fcf0c113235805ba206e294717a64fa8e04ae3ad9c4",
-                "sha256:9741db6de2950a0a5cefbdb72ec7ab12f7e9fd530ff47219f1530e79183cbaaf"
-            ],
-            "version": "==0.11"
-        },
-        "authutils": {
-            "hashes": [
-                "sha256:ded3e5c0e35160eab83bfb217976920396441e19ed977acacbb769e988323850",
-                "sha256:df9b551b4ab561452f0f4b50edaddccc443905b4d77ee69ea7eea78938e7caed"
-            ],
-            "markers": "python_version >= '3.9' and python_version < '4.0'",
-            "version": "==6.2.2"
-        },
-        "backoff": {
-            "hashes": [
-                "sha256:61928f8fa48d52e4faa81875eecf308eccfb1016b018bb6bd21e05b5d90a96c5",
-                "sha256:ccb962a2378418c667b3c979b504fdeb7d9e0d29c0579e3b13b86467177728cb"
-            ],
-            "markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4'",
-            "version": "==1.11.1"
-        },
-        "blinker": {
-            "hashes": [
-                "sha256:4afd3de66ef3a9f8067559fb7a1cbe555c17dcbe15971b05d1b625c3e7abe213",
-                "sha256:c3d739772abb7bc2860abf5f2ec284223d9ad5c76da018234f6f50d6f31ab1f0"
-            ],
-            "markers": "python_version >= '3.7'",
-            "version": "==1.6.2"
-        },
-        "cached-property": {
-            "hashes": [
-                "sha256:9fa5755838eecbb2d234c3aa390bd80fbd3ac6b6869109bfc1b499f7bd89a130",
-                "sha256:df4f613cf7ad9a588cc381aaf4a512d26265ecebd5eb9e1ba12f1319eb85a6a0"
-            ],
-            "version": "==1.5.2"
-        },
-        "cdiserrors": {
-            "hashes": [
-                "sha256:2e188645832e8c98468267af3e54bc5d3a298078b9869899256251e54dc1599d",
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diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 00000000..29f67e2e
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,21 @@
+[tool.poetry]
+name = "indexclient"
+version = "3.0.0"
+description = ""
+authors = ["CTDS UChicago <cdis@uchicago.edu>"]
+license = "Apache-2.0"
+repository = "https://github.com/uc-cdis/indexclient"
+
+[tool.poetry.dependencies]
+python = ">=3.13, <4.0"
+
+[build-system]
+requires = ["poetry-core>=2.0.0"]
+build-backend = "poetry.core.masonry.api"
+
+[tool.poetry.group.dev.dependencies]
+pytest = "*"
+mock = "*"
+requests = "*"
+cdisutilstest = { git = "https://github.com/uc-cdis/cdisutils-test.git", tag = "2.0.0" }
+indexd = { git = "https://github.com/uc-cdis/indexd.git", tag = "5.1.3" }

From 1ae72b3fa2921aeea36fbec013fbacd4cd3bfbe3 Mon Sep 17 00:00:00 2001
From: Nina <randorf@uchicago.edu>
Date: Fri, 20 Feb 2026 15:16:11 -0600
Subject: [PATCH 2/2] update reference

---
 poetry.lock    | 1616 ++++++++++++++++++++++++++++++++++++++++++++++++
 pyproject.toml |    2 +-
 2 files changed, 1617 insertions(+), 1 deletion(-)
 create mode 100644 poetry.lock

diff --git a/poetry.lock b/poetry.lock
new file mode 100644
index 00000000..b52baab6
--- /dev/null
+++ b/poetry.lock
@@ -0,0 +1,1616 @@
+# This file is automatically @generated by Poetry 2.3.2 and should not be changed by hand.
+
+[[package]]
+name = "alembic"
+version = "1.18.4"
+description = "A database migration tool for SQLAlchemy."
+optional = false
+python-versions = ">=3.10"
+groups = ["dev"]
+files = [
+    {file = "alembic-1.18.4-py3-none-any.whl", hash = "sha256:a5ed4adcf6d8a4cb575f3d759f071b03cd6e5c7618eb796cb52497be25bfe19a"},
+    {file = "alembic-1.18.4.tar.gz", hash = "sha256:cb6e1fd84b6174ab8dbb2329f86d631ba9559dd78df550b57804d607672cedbc"},
+]
+
+[package.dependencies]
+Mako = "*"
+SQLAlchemy = ">=1.4.23"
+typing-extensions = ">=4.12"
+
+[package.extras]
+tz = ["tzdata"]
+
+[[package]]
+name = "anyio"
+version = "4.12.1"
+description = "High-level concurrency and networking framework on top of asyncio or Trio"
+optional = false
+python-versions = ">=3.9"
+groups = ["dev"]
+files = [
+    {file = "anyio-4.12.1-py3-none-any.whl", hash = "sha256:d405828884fc140aa80a3c667b8beed277f1dfedec42ba031bd6ac3db606ab6c"},
+    {file = "anyio-4.12.1.tar.gz", hash = "sha256:41cfcc3a4c85d3f05c932da7c26d0201ac36f72abd4435ba90d0464a3ffed703"},
+]
+
+[package.dependencies]
+idna = ">=2.8"
+
+[package.extras]
+trio = ["trio (>=0.31.0) ; python_version < \"3.10\"", "trio (>=0.32.0) ; python_version >= \"3.10\""]
+
+[[package]]
+name = "attrs"
+version = "25.4.0"
+description = "Classes Without Boilerplate"
+optional = false
+python-versions = ">=3.9"
+groups = ["dev"]
+files = [
+    {file = "attrs-25.4.0-py3-none-any.whl", hash = "sha256:adcf7e2a1fb3b36ac48d97835bb6d8ade15b8dcce26aba8bf1d14847b57a3373"},
+    {file = "attrs-25.4.0.tar.gz", hash = "sha256:16d5969b87f0859ef33a48b35d55ac1be6e42ae49d5e853b597db70c35c57e11"},
+]
+
+[[package]]
+name = "authlib"
+version = "1.6.8"
+description = "The ultimate Python library in building OAuth and OpenID Connect servers and clients."
+optional = false
+python-versions = ">=3.9"
+groups = ["dev"]
+files = [
+    {file = "authlib-1.6.8-py2.py3-none-any.whl", hash = "sha256:97286fd7a15e6cfefc32771c8ef9c54f0ed58028f1322de6a2a7c969c3817888"},
+    {file = "authlib-1.6.8.tar.gz", hash = "sha256:41ae180a17cf672bc784e4a518e5c82687f1fe1e98b0cafaeda80c8e4ab2d1cb"},
+]
+
+[package.dependencies]
+cryptography = "*"
+
+[[package]]
+name = "authutils"
+version = "7.2.5"
+description = "Gen3 auth utility functions"
+optional = false
+python-versions = "<4.0,>=3.13"
+groups = ["dev"]
+files = [
+    {file = "authutils-7.2.5-py3-none-any.whl", hash = "sha256:96c627a99e0ab15c834043ffa23371cc1670dcaf4a00a0428a447ecbedffa9b1"},
+    {file = "authutils-7.2.5.tar.gz", hash = "sha256:48cb0bbfc3338cf8cd4a25fa14bb7f8986d00ebf5db46565ceb2a85b43e8bf57"},
+]
+
+[package.dependencies]
+authlib = ">=1.6.6"
+cached-property = ">=1.4,<2.0"
+cdiserrors = "*"
+cdislogging = "*"
+cryptography = ">=46.0.5"
+httpx = ">=0.23.0,<1.0.0"
+pyjwt = {version = ">=2.4.0,<3.0", extras = ["crypto"]}
+starlette = "*"
+werkzeug = ">=3.1.5"
+xmltodict = ">=0.9,<1.0"
+
+[package.extras]
+datamodelutils = ["datamodelutils"]
+fastapi = ["fastapi"]
+flask = ["Flask"]
+
+[[package]]
+name = "backoff"
+version = "2.2.1"
+description = "Function decoration for backoff and retry"
+optional = false
+python-versions = ">=3.7,<4.0"
+groups = ["dev"]
+files = [
+    {file = "backoff-2.2.1-py3-none-any.whl", hash = "sha256:63579f9a0628e06278f7e47b7d7d5b6ce20dc65c5e96a6f3ca99a6adca0396e8"},
+    {file = "backoff-2.2.1.tar.gz", hash = "sha256:03f829f5bb1923180821643f8753b0502c3b682293992485b0eef2807afa5cba"},
+]
+
+[[package]]
+name = "blinker"
+version = "1.9.0"
+description = "Fast, simple object-to-object and broadcast signaling"
+optional = false
+python-versions = ">=3.9"
+groups = ["dev"]
+files = [
+    {file = "blinker-1.9.0-py3-none-any.whl", hash = "sha256:ba0efaa9080b619ff2f3459d1d500c57bddea4a6b424b60a91141db6fd2f08bc"},
+    {file = "blinker-1.9.0.tar.gz", hash = "sha256:b4ce2265a7abece45e7cc896e98dbebe6cead56bcf805a3d23136d145f5445bf"},
+]
+
+[[package]]
+name = "cached-property"
+version = "1.5.2"
+description = "A decorator for caching properties in classes."
+optional = false
+python-versions = "*"
+groups = ["dev"]
+files = [
+    {file = "cached-property-1.5.2.tar.gz", hash = "sha256:9fa5755838eecbb2d234c3aa390bd80fbd3ac6b6869109bfc1b499f7bd89a130"},
+    {file = "cached_property-1.5.2-py2.py3-none-any.whl", hash = "sha256:df4f613cf7ad9a588cc381aaf4a512d26265ecebd5eb9e1ba12f1319eb85a6a0"},
+]
+
+[[package]]
+name = "cdiserrors"
+version = "2.1.0"
+description = "Gen3 shared exceptions and utilities."
+optional = false
+python-versions = "<4,>=3.13"
+groups = ["dev"]
+files = [
+    {file = "cdiserrors-2.1.0-py3-none-any.whl", hash = "sha256:702a15e3831f85b4d8b1cd4f66f8581cbe43faf6bb22d1726e657e76cf6d238b"},
+    {file = "cdiserrors-2.1.0.tar.gz", hash = "sha256:853f807111f188d26031d553bfd2b70fe7d23826304cba324aebc40e6442fd2d"},
+]
+
+[package.dependencies]
+cdislogging = "*"
+werkzeug = "*"
+
+[package.extras]
+flask = ["Flask"]
+
+[[package]]
+name = "cdislogging"
+version = "1.2.0"
+description = "Standardized logging tool and format for CTDS applications"
+optional = false
+python-versions = "<4,>=3.13"
+groups = ["dev"]
+files = [
+    {file = "cdislogging-1.2.0-py3-none-any.whl", hash = "sha256:3596addc972c3e65c738231381244089f84466e9c6e2662e096ad53154018f54"},
+    {file = "cdislogging-1.2.0.tar.gz", hash = "sha256:ca7511b685bbf0b4727fef85ca4eab78271b4618139a621b09c2846aed6d19d1"},
+]
+
+[[package]]
+name = "cdisutilstest"
+version = "2.0.0"
+description = "Collection of test data and tools"
+optional = false
+python-versions = "*"
+groups = ["dev"]
+files = []
+develop = false
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+
+[package.extras]
+aiomysql = ["aiomysql (>=0.2.0) ; python_version >= \"3\"", "greenlet (!=0.4.17) ; python_version >= \"3\""]
+aiosqlite = ["aiosqlite ; python_version >= \"3\"", "greenlet (!=0.4.17) ; python_version >= \"3\"", "typing_extensions (!=3.10.0.1)"]
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+mssql = ["pyodbc"]
+mssql-pymssql = ["pymssql", "pymssql"]
+mssql-pyodbc = ["pyodbc", "pyodbc"]
+mypy = ["mypy (>=0.910) ; python_version >= \"3\"", "sqlalchemy2-stubs"]
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+mysql-connector = ["mysql-connector-python", "mysql-connector-python"]
+oracle = ["cx_oracle (>=7) ; python_version >= \"3\"", "cx_oracle (>=7,<8) ; python_version < \"3\""]
+postgresql = ["psycopg2 (>=2.7)"]
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+postgresql-psycopg2binary = ["psycopg2-binary"]
+postgresql-psycopg2cffi = ["psycopg2cffi"]
+pymysql = ["pymysql (<1) ; python_version < \"3\"", "pymysql ; python_version >= \"3\""]
+sqlcipher = ["sqlcipher3_binary ; python_version >= \"3\""]
+
+[[package]]
+name = "sqlalchemy-utils"
+version = "0.37.9"
+description = "Various utility functions for SQLAlchemy."
+optional = false
+python-versions = "~=3.4"
+groups = ["dev"]
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+[package.dependencies]
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+[package.extras]
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+color = ["colour (>=0.0.4)"]
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+password = ["passlib (>=1.6,<2.0)"]
+pendulum = ["pendulum (>=2.0.5)"]
+phone = ["phonenumbers (>=5.9.2)"]
+test = ["Jinja2 (>=2.3)", "Pygments (>=1.2)", "backports.zoneinfo ; python_version < \"3.9\"", "docutils (>=0.10)", "flake8 (>=2.4.0)", "flexmock (>=0.9.7)", "isort (>=4.2.2)", "mock (==2.0.0)", "pg8000 (>=1.12.4)", "psycopg2 (>=2.5.1)", "psycopg2cffi (>=2.8.1)", "pymysql", "pyodbc", "pytest (>=2.7.1)", "python-dateutil (>=2.6)", "pytz (>=2014.2)"]
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+timezone = ["python-dateutil"]
+url = ["furl (>=0.4.1)"]
+
+[[package]]
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+description = "The little ASGI library that shines."
+optional = false
+python-versions = ">=3.10"
+groups = ["dev"]
+files = [
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+
+[[package]]
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+description = "Backported and Experimental Type Hints for Python 3.9+"
+optional = false
+python-versions = ">=3.9"
+groups = ["dev"]
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+description = "HTTP library with thread-safe connection pooling, file post, and more."
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+python-versions = ">=3.9"
+groups = ["dev"]
+files = [
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+[package.extras]
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+h2 = ["h2 (>=4,<5)"]
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+zstd = ["backports-zstd (>=1.0.0) ; python_version < \"3.14\""]
+
+[[package]]
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+description = "The comprehensive WSGI web application library."
+optional = false
+python-versions = ">=3.9"
+groups = ["dev"]
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+[package.dependencies]
+markupsafe = ">=2.1.1"
+
+[package.extras]
+watchdog = ["watchdog (>=2.3)"]
+
+[[package]]
+name = "xmltodict"
+version = "0.15.1"
+description = "Makes working with XML feel like you are working with JSON"
+optional = false
+python-versions = ">=3.9"
+groups = ["dev"]
+files = [
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+    {file = "xmltodict-0.15.1.tar.gz", hash = "sha256:3d8d49127f3ce6979d40a36dbcad96f8bab106d232d24b49efdd4bd21716983c"},
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+
+[metadata]
+lock-version = "2.1"
+python-versions = ">=3.13, <4.0"
+content-hash = "c0114f4b1772636c696c1ea48c179eea860727e315a68a3b09aef1b7727de943"
diff --git a/pyproject.toml b/pyproject.toml
index 29f67e2e..d8f7ca87 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -18,4 +18,4 @@ pytest = "*"
 mock = "*"
 requests = "*"
 cdisutilstest = { git = "https://github.com/uc-cdis/cdisutils-test.git", tag = "2.0.0" }
-indexd = { git = "https://github.com/uc-cdis/indexd.git", tag = "5.1.3" }
+indexd = { git = "https://github.com/uc-cdis/indexd.git", tag = "6.0.0" }