statistic-cadillac.yml

unique-id: statistic-cadillac
phe-label: SIM-BA3
who-label: Omicron
alternate-names:
-
belongs-to-lineage:
- PANGO: BA.3
description: This variant is a sublineage of B.1.1.529
information-sources:
- https://github.com/cov-lineages/pango-designation/issues/367
requires: plausible-scanner
variants:
- codon-change: AAC-AAT
  gene: ORF1ab
  one-based-reference-position: 832
  predicted-effect: synonymous
  protein: nsp2
  protein-codon-position: 9
  reference-base: C
  snp-codon-position: 3
  type: SNP
  variant-base: T
- amino-acid-change: A88V
  codon-change: GCT-GTT
  gene: ORF1ab
  one-based-reference-position: 11235
  predicted-effect: non-synonymous
  protein: nsp6
  protein-codon-position: 88
  reference-base: C
  type: SNP
  variant-base: T
- amino-acid-change: A67V
  codon-change: GCT-GTT
  gene: S
  one-based-reference-position: 21762
  predicted-effect: non-synonymous
  protein: surface glycoprotein
  protein-codon-position: 67
  reference-base: C
  type: SNP
  variant-base: T
- amino-acid-change: D405N
  codon-change: GAT-AAT
  gene: S
  one-based-reference-position: 22775
  predicted-effect: non-synonymous
  protein: surface glycoprotein
  protein-codon-position: 405
  reference-base: G
  type: SNP
  variant-base: A
- codon-change: TTC-TTT
  gene: N
  one-based-reference-position: 29311
  predicted-effect: synonymous
  protein: nucleocapsid phosphoprotein
  protein-codon-position: 346
  reference-base: C
  snp-codon-position: 3
  type: SNP
  variant-base: T
calling-definition:
  confirmed:
    mutations-required: 4
    indels-required: 0
    allowed-wildtype: 0
  probable:
    mutations-required: 3
    indels-required: 0
    allowed-wildtype: 1
  low-qc:
    mutations-required: 0
    indels-required: 0
    allowed-wildtype: 0