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agnessaagnessa
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Merge branch 'release-0.9.3'
2 parents 37a384e + 2b732c9 commit aa7efa8

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4 files changed

+203
-0
lines changed

4 files changed

+203
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‎db/migrate/20150116112256_add_cites_listing_to_api_taxon_concepts_view.rb

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class AddCitesListingToApiTaxonConceptsView < ActiveRecord::Migration
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def change
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execute "DROP VIEW IF EXISTS api_taxon_concepts_view"
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execute "CREATE VIEW api_taxon_concepts_view AS #{view_sql('20150116112256', 'api_taxon_concepts_view')}"
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end
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end

‎db/migrate/20150119122122_check_for_synonym_status_in_api_taxon_concepts_view.rb

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class CheckForSynonymStatusInApiTaxonConceptsView < ActiveRecord::Migration
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def up
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execute "DROP VIEW IF EXISTS api_taxon_concepts_view"
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execute "CREATE VIEW api_taxon_concepts_view AS #{view_sql('20150119122122', 'api_taxon_concepts_view')}"
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end
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def down
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execute "DROP VIEW IF EXISTS api_taxon_concepts_view"
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execute "CREATE VIEW api_taxon_concepts_view AS #{view_sql('20150116112256', 'api_taxon_concepts_view')}"
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end
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end

‎db/views/api_taxon_concepts_view/20150116112256.sql

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SELECT
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tc.id,
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tc.parent_id,
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taxonomies.name,
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CASE WHEN taxonomies.name = 'CITES_EU' THEN TRUE ELSE FALSE END AS taxonomy_is_cites_eu,
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tc.full_name,
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tc.author_year,
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'A' AS name_status,
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ranks.name AS rank,
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tc.taxonomic_position,
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tc.listing->'cites_listing' AS cites_listing,
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tc.data->'kingdom_name' AS kingdom_name,
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tc.data->'phylum_name' AS phylum_name,
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tc.data->'class_name' AS class_name,
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tc.data->'order_name' AS order_name,
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tc.data->'family_name' AS family_name,
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tc.data->'genus_name' AS genus_name,
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ROW_TO_JSON(
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ROW(
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tc.data->'kingdom_name',
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tc.data->'phylum_name',
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tc.data->'class_name',
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tc.data->'order_name',
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tc.data->'family_name'
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)::api_higher_taxa
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) AS higher_taxa,
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ARRAY_TO_JSON(
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ARRAY_AGG_NOTNULL(
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ROW(
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synonyms.id, synonyms.full_name, synonyms.author_year, synonyms.data->'rank_name'
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)::api_taxon_concept
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)
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) AS synonyms,
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NULL AS accepted_names,
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tc.created_at,
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tc.updated_at
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FROM taxon_concepts tc
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JOIN taxonomies ON taxonomies.id = tc.taxonomy_id
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JOIN ranks ON ranks.id = tc.rank_id
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LEFT JOIN taxon_relationships tr
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ON tr.taxon_concept_id = tc.id
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LEFT JOIN taxon_relationship_types trt
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ON trt.id = tr.taxon_relationship_type_id AND trt.name = 'HAS_SYNONYM'
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LEFT JOIN taxon_concepts synonyms
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ON synonyms.id = tr.other_taxon_concept_id
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WHERE tc.name_status = 'A'
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GROUP BY tc.id, tc.parent_id, taxonomies.name, tc.full_name, tc.author_year, ranks.name,
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tc.taxonomic_position,
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tc.created_at, tc.updated_at
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UNION ALL
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SELECT
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tc.id,
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NULL AS parent_id,
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taxonomies.name,
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CASE WHEN taxonomies.name = 'CITES' THEN TRUE ELSE FALSE END AS taxonomy_is_cites_eu,
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tc.full_name,
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tc.author_year,
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'S' AS name_status,
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ranks.name AS rank,
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NULL AS taxonomic_position,
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NULL AS cites_listing,
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NULL AS kingdom_name,
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NULL AS phylum_name,
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NULL AS class_name,
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NULL AS order_name,
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NULL AS family_name,
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NULL AS genus_name,
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NULL::JSON AS higher_taxa,
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NULL AS synonyms,
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ARRAY_TO_JSON(
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ARRAY_AGG_NOTNULL(
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ROW(
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accepted_names.id, accepted_names.full_name, accepted_names.author_year, accepted_names.data->'rank_name'
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)::api_taxon_concept
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)
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) AS accepted_names,
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tc.created_at,
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tc.updated_at
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FROM taxon_concepts tc
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JOIN taxonomies ON taxonomies.id = tc.taxonomy_id
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JOIN ranks ON ranks.id = tc.rank_id
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JOIN taxon_relationships tr
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ON tr.other_taxon_concept_id = tc.id
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JOIN taxon_relationship_types trt
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ON trt.id = tr.taxon_relationship_type_id AND trt.name = 'HAS_SYNONYM'
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JOIN taxon_concepts accepted_names
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ON accepted_names.id = tr.taxon_concept_id
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WHERE tc.name_status = 'S'
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GROUP BY tc.id, tc.parent_id, taxonomies.name, tc.full_name, tc.author_year, ranks.name,
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tc.taxonomic_position,
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tc.created_at, tc.updated_at;

‎db/views/api_taxon_concepts_view/20150119122122.sql

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SELECT
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tc.id,
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tc.parent_id,
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taxonomies.name,
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CASE WHEN taxonomies.name = 'CITES_EU' THEN TRUE ELSE FALSE END AS taxonomy_is_cites_eu,
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tc.full_name,
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tc.author_year,
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'A' AS name_status,
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ranks.name AS rank,
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tc.taxonomic_position,
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tc.listing->'cites_listing' AS cites_listing,
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tc.data->'kingdom_name' AS kingdom_name,
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tc.data->'phylum_name' AS phylum_name,
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tc.data->'class_name' AS class_name,
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tc.data->'order_name' AS order_name,
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tc.data->'family_name' AS family_name,
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tc.data->'genus_name' AS genus_name,
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ROW_TO_JSON(
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ROW(
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tc.data->'kingdom_name',
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tc.data->'phylum_name',
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tc.data->'class_name',
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tc.data->'order_name',
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tc.data->'family_name'
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)::api_higher_taxa
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) AS higher_taxa,
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ARRAY_TO_JSON(
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ARRAY_AGG_NOTNULL(
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ROW(
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synonyms.id, synonyms.full_name, synonyms.author_year, synonyms.data->'rank_name'
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)::api_taxon_concept
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)
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) AS synonyms,
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NULL AS accepted_names,
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tc.created_at,
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tc.updated_at
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FROM taxon_concepts tc
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JOIN taxonomies ON taxonomies.id = tc.taxonomy_id
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JOIN ranks ON ranks.id = tc.rank_id
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LEFT JOIN taxon_relationships tr
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ON tr.taxon_concept_id = tc.id
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LEFT JOIN taxon_relationship_types trt
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ON trt.id = tr.taxon_relationship_type_id AND trt.name = 'HAS_SYNONYM'
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LEFT JOIN taxon_concepts synonyms
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ON synonyms.id = tr.other_taxon_concept_id AND synonyms.taxonomy_id = taxonomies.id
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WHERE tc.name_status = 'A'
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GROUP BY tc.id, tc.parent_id, taxonomies.name, tc.full_name, tc.author_year, ranks.name,
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tc.taxonomic_position,
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tc.created_at, tc.updated_at
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UNION ALL
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SELECT
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tc.id,
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NULL AS parent_id,
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taxonomies.name,
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CASE WHEN taxonomies.name = 'CITES' THEN TRUE ELSE FALSE END AS taxonomy_is_cites_eu,
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tc.full_name,
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tc.author_year,
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'S' AS name_status,
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ranks.name AS rank,
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NULL AS taxonomic_position,
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NULL AS cites_listing,
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NULL AS kingdom_name,
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NULL AS phylum_name,
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NULL AS class_name,
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NULL AS order_name,
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NULL AS family_name,
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NULL AS genus_name,
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NULL::JSON AS higher_taxa,
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NULL AS synonyms,
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ARRAY_TO_JSON(
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ARRAY_AGG_NOTNULL(
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ROW(
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accepted_names.id, accepted_names.full_name, accepted_names.author_year, accepted_names.data->'rank_name'
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)::api_taxon_concept
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)
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) AS accepted_names,
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tc.created_at,
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tc.updated_at
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FROM taxon_concepts tc
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JOIN taxonomies ON taxonomies.id = tc.taxonomy_id
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JOIN ranks ON ranks.id = tc.rank_id
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JOIN taxon_relationships tr
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ON tr.other_taxon_concept_id = tc.id
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JOIN taxon_relationship_types trt
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ON trt.id = tr.taxon_relationship_type_id AND trt.name = 'HAS_SYNONYM'
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JOIN taxon_concepts accepted_names
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ON accepted_names.id = tr.taxon_concept_id AND accepted_names.taxonomy_id = taxonomies.id
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WHERE tc.name_status = 'S'
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GROUP BY tc.id, tc.parent_id, taxonomies.name, tc.full_name, tc.author_year, ranks.name,
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tc.taxonomic_position,
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tc.created_at, tc.updated_at;

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