Please cite the following tools which are part of AmpliconSuite-pipeline in your work, where applicable BWA MEM https://arxiv.org/abs/1303.3997 SAMtools https://pubmed.ncbi.nlm.nih.gov/19505943/ CNVkit https://pubmed.ncbi.nlm.nih.gov/27100738/ AmpliconArchitect https://pubmed.ncbi.nlm.nih.gov/30674876/ AmpliconClassifier https://www.biorxiv.org/content/10.1101/2022.07.25.501144v1