Remove Vega plots that require backend processing (#940)

All benchmarks now use Plotly instead of Vega. JSON for vega plots no longer needs to be updated for every upload. This does not remove all backend processing.

Author: wd15

Makefile

@@ -27,22 +27,16 @@ $(HEXBIN_OUT): $(HEXBIN_IN)
 
 yamllint: $(YAML_FILES_OUT)
 
-build_charts: _data/simulations.py $(YAML_FILES_OUT)
-	python _data/simulations.py
-
 data_table: _data/data_table.py
 	python _data/data_table.py
 
 doi_data: _data/to_doi_csv.py
 	python _data/to_doi_csv.py
 
-simulations: yamllint build_charts data_table
+simulations: yamllint data_table
 
 hexbin: $(HEXBIN_OUT)
 
 notebooks: $(NOTEBOOKS_HTML) $(NOTEBOOKS_MD)
 
 print-%  : ; @echo $* = $($*)
-
-install:
-	echo "fake install"

_data/PF4_Install-a-thon_Responses.csv

@@ -21,6 +21,29 @@
       commit:
         sha: "3d5d8aab40e1f83fe52bfaa3047a741e8ef4ef37"
         url: "hackathon1/problems.ipynb"
+  data:
+    - name: total_free_energy
+      data_name: free_energy
+      title: Free Energy v Time
+      x_title: '<i>t</i>'
+      y_title: '&#8497;'
+      x_scale: log
+      y_scale: log
+      minimum: 1.0
+      type: scatter
+      mode: lines
+      func: get_values
+    - name: efficiency
+      type: scatter
+      x_scale: log
+      y_scale: log
+      x_title: '<i>t</i><sub>Wall</sub> / <i>t</i><sub>Sim</sub> *'
+      y_title: 'Memory Usage (KB)'
+      title: Efficiency
+      mode: markers
+      footnote: "<span class='plotly-footnote' >* Wall time divided by the total simulated time.</span>"
+      func: efficiency
+
 
 - title: Ostwald Ripening
   description: Coupling of conserved and non-conserved dynamics
@@ -45,6 +68,30 @@
       commit:
         url: "hackathon1/problems.ipynb"
         sha: "3d5d8aab40e1f83fe52bfaa3047a741e8ef4ef37"
+  data:
+    - name: total_free_energy
+      data_name: free_energy
+      title: Free Energy v Time
+      x_title: '<i>t</i>'
+      y_title: '&#8497;'
+      x_scale: log
+      y_scale: log
+      minimum: 1.0
+      type: scatter
+      mode: lines
+      func: get_values
+    - name: efficiency
+      type: scatter
+      x_scale: log
+      y_scale: log
+      x_title: '<i>t</i><sub>Wall</sub> / <i>t</i><sub>Sim</sub> *'
+      y_title: 'Memory Usage (KB)'
+      title: Efficiency
+      mode: markers
+      footnote: "<span class='plotly-footnote' >* Wall time divided by the total simulated time.</span>"
+      func: efficiency
+
+
 
 - title: Dendritic Growth
   description: Solidification and dendritic growth in a single-component
@@ -300,6 +347,28 @@
       commit:
         sha: "c31dc4e96b7a35b6266c68e9911521e732943c5d"
         url: "benchmarks/benchmark6-hackathon.ipynb"
+  data:
+    - name: total_free_energy
+      data_name: free_energy
+      title: Free Energy v Time
+      x_title: '<i>t</i>'
+      y_title: '&#8497;'
+      x_scale: log
+      y_scale: log
+      minimum: 1.0
+      type: scatter
+      mode: lines
+      func: get_values
+    - name: efficiency
+      type: scatter
+      x_scale: log
+      y_scale: log
+      x_title: '<i>t</i><sub>Wall</sub> / <i>t</i><sub>Sim</sub> *'
+      y_title: 'Memory Usage (KB)'
+      title: Efficiency
+      mode: markers
+      footnote: "<span class='plotly-footnote' >* Wall time divided by the total simulated time.</span>"
+      func: efficiency
 
 - title: MMS Allen-Cahn
   description: Use the Method of Manufactured Solutions to verify codes