DESCRIPTION

Package: ezRun
Type: Package
Title: An R meta-package for the analysis of Next Generation Sequencing Data
Version: 3.20.1
Date: 2024-12-13
Author: Hubert Rehrauer and others
Maintainer: sequencing <sequencing@fgcz.ethz.ch>
Description: An environment that makes it easy to process data by using R
    packages and external tools.
License: GPL-3 | file LICENSE
URL: https://github.com/uzh/ezRun
Depends:
    stats,methods,utils,data.table,Biostrings,GenomicRanges,tidyverse
Imports:
Suggests:
    testthat, knitr, gage, goseq, ChIPpeakAnno, DESeq2, TEQC,
    pathview, reshape2, vsn, Rsubread, preprocessCore, wesanderson,
    RCurl, caTools, matrixStats, Repitools, DT, htmltools, biomaRt,
    RColorBrewer, WGCNA, plyr, pvclust, parallel, Biostrings,
    Rsamtools, Hmisc, XML, stringr, GenomicAlignments, GenomicFeatures,
    GenomicRanges, ShortRead, Gviz, gplots, GO.db, GOstats, annotate,
    bitops, edgeR, limma, S4Vectors, VariantAnnotation, rmarkdown, plotly,
    kableExtra, htmlwidgets, RSelenium, webshot, clusterProfiler, dupRadar,
    scran, writexl, zip
SystemRequirements:
VignetteBuilder: knitr
RoxygenNote: 7.0.0