From 830c842efc338c2f363b82cd89973e88b1832467 Mon Sep 17 00:00:00 2001 From: Weihong Qi Date: Wed, 10 May 2023 15:40:43 +0200 Subject: [PATCH] pbsv copy outdir --- master/lib/PbsvApp.rb | 8 ++------ 1 file changed, 2 insertions(+), 6 deletions(-) diff --git a/master/lib/PbsvApp.rb b/master/lib/PbsvApp.rb index d40d5362..b15e7a7c 100644 --- a/master/lib/PbsvApp.rb +++ b/master/lib/PbsvApp.rb @@ -44,13 +44,9 @@ def initialize def next_dataset { 'Name'=>@dataset['Name'], - 'VCF [File]'=>File.join(@result_dir, "#{@dataset['Name']}.vcf.gz"), - 'TBI [File]'=>File.join(@result_dir, "#{@dataset['Name']}.vcf.gz.tbi"), 'refBuild'=>@params['refBuild'], - 'stats [File]'=>File.join(@result_dir, "#{@dataset['Name']}.stats.txt"), - 'OutReport [Link]'=>File.join(@result_dir, "#{@dataset['Name']}.html"), - 'OutReport [File]'=>File.join(@result_dir, "#{@dataset['Name']}.html"), - 'PbsvLog [File]'=>File.join(@result_dir, "#{@dataset['Name']}_pbsv.log") + 'OutDir [File]'=>File.join(@result_dir, "#{@dataset['Name']}"), + 'OutReport [Link]'=>File.join(@result_dir, "#{@dataset['Name']}", "#{@dataset['Name']}.html") } end def set_default_parameters