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Shaurita Hutchins
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[![Coverage status](https://codecov.io/gh/vallenderlab/MicrobiomeR/branch/master/graph/badge.svg)](https://codecov.io/github/vallenderlab/MicrobiomeR?branch=master)
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[![DOI](http://joss.theoj.org/papers/10.21105/joss.01299/status.svg)](https://doi.org/10.21105/joss.01299)
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# MicrobiomeR <a href='https://microbiomer.vallenderlab.science/'><img src="man/figures/logo.png" align="right" height=300/></a>
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# MicrobiomeR <a href='https://microbiomer.vallenderlab.org/'><img src="man/figures/logo.png" align="right" height=300/></a>
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An R package for microbiome analysis that incorporates [phyloseq](https://github.com/joey711/phyloseq),
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[metacoder](https://github.com/grunwaldlab/metacoder), [taxa](https://github.com/ropensci/taxa), and [microbiome](https://github.com/microbiome/microbiome/) in order to standardize and simplify common microbiome workflows.
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install_github("vallenderlab/MicrobiomeR") # Install the package
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```
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Please visit https://microbiomer.vallenderlab.science/ for extensive documentation of the package.
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Please visit https://microbiomer.vallenderlab.org/ for extensive documentation of the package.
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## Workflow Features
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