From 3daa3706426336da746c9a1e6fd8657f4dea1f41 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 18 Mar 2024 21:08:40 +0000 Subject: [PATCH] build(deps): bump the noodles group with 6 updates Bumps the noodles group with 6 updates: | Package | From | To | | --- | --- | --- | | [noodles-bgzf](https://github.com/zaeleus/noodles) | `0.26.0` | `0.27.0` | | [noodles-csi](https://github.com/zaeleus/noodles) | `0.30.0` | `0.31.0` | | [noodles-fasta](https://github.com/zaeleus/noodles) | `0.33.0` | `0.34.0` | | [noodles-tabix](https://github.com/zaeleus/noodles) | `0.36.0` | `0.37.0` | | [noodles-vcf](https://github.com/zaeleus/noodles) | `0.49.0` | `0.50.0` | | [seqrepo](https://github.com/varfish-org/seqrepo-rs) | `0.10.0` | `0.10.1` | Updates `noodles-bgzf` from 0.26.0 to 0.27.0 - [Commits](https://github.com/zaeleus/noodles/compare/noodles-bgzf-0.26.0...noodles-bgzf-0.27.0) Updates `noodles-csi` from 0.30.0 to 0.31.0 - [Commits](https://github.com/zaeleus/noodles/compare/noodles-csi-0.30.0...noodles-csi-0.31.0) Updates `noodles-fasta` from 0.33.0 to 0.34.0 - [Commits](https://github.com/zaeleus/noodles/compare/noodles-fasta-0.33.0...noodles-fasta-0.34.0) Updates `noodles-tabix` from 0.36.0 to 0.37.0 - [Commits](https://github.com/zaeleus/noodles/compare/noodles-tabix-0.36.0...noodles-tabix-0.37.0) Updates `noodles-vcf` from 0.49.0 to 0.50.0 - [Commits](https://github.com/zaeleus/noodles/compare/noodles-vcf-0.49.0...noodles-vcf-0.50.0) Updates `seqrepo` from 0.10.0 to 0.10.1 - [Release notes](https://github.com/varfish-org/seqrepo-rs/releases) - [Changelog](https://github.com/varfish-org/seqrepo-rs/blob/main/CHANGELOG.md) - [Commits](https://github.com/varfish-org/seqrepo-rs/compare/v0.10.0...v0.10.1) --- updated-dependencies: - dependency-name: noodles-bgzf dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-csi dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-fasta dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-tabix dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-vcf dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: seqrepo dependency-type: direct:production update-type: version-update:semver-patch dependency-group: noodles ... Signed-off-by: dependabot[bot] --- Cargo.lock | 120 ++++++++++++++++++++++++++++++++++++++--------------- Cargo.toml | 10 ++--- 2 files changed, 92 insertions(+), 38 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index 66abf504..a5f65aa9 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -290,12 +290,12 @@ dependencies = [ "indicatif", "log", "noodles-bed", - "noodles-bgzf", + "noodles-bgzf 0.26.0", "noodles-core", - "noodles-csi", + "noodles-csi 0.30.0", "noodles-gff", - "noodles-tabix", - "noodles-vcf", + "noodles-tabix 0.36.0", + "noodles-vcf 0.49.0", "pbjson", "pbjson-build", "pbjson-types", @@ -1773,9 +1773,9 @@ dependencies = [ [[package]] name = "hashlink" -version = "0.8.4" +version = "0.9.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e8094feaf31ff591f651a2664fb9cfd92bba7a60ce3197265e9482ebe753c8f7" +checksum = "692eaaf7f7607518dd3cef090f1474b61edc5301d8012f09579920df68b725ee" dependencies = [ "hashbrown 0.14.3", ] @@ -2096,9 +2096,9 @@ dependencies = [ [[package]] name = "libsqlite3-sys" -version = "0.27.0" +version = "0.28.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "cf4e226dcd58b4be396f7bd3c20da8fdee2911400705297ba7d2d7cc2c30f716" +checksum = "0c10584274047cb335c23d3e61bcef8e323adae7c5c8c760540f73610177fc3f" dependencies = [ "pkg-config", "vcpkg", @@ -2240,12 +2240,12 @@ dependencies = [ "lazy_static", "log", "nom", - "noodles-bgzf", + "noodles-bgzf 0.27.0", "noodles-core", - "noodles-csi", - "noodles-fasta 0.33.0", - "noodles-tabix", - "noodles-vcf", + "noodles-csi 0.31.0", + "noodles-fasta 0.34.0", + "noodles-tabix 0.37.0", + "noodles-vcf 0.50.0", "parse-display", "pbjson", "pbjson-build", @@ -2406,6 +2406,18 @@ name = "noodles-bgzf" version = "0.26.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "8970db2e84adb1007377dd3988258d7a64e3fc4c05602ebf94e1f8cba207c030" +dependencies = [ + "byteorder", + "bytes", + "crossbeam-channel", + "flate2", +] + +[[package]] +name = "noodles-bgzf" +version = "0.27.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "43ce62d1e012aa3793e17be1c286b8b71dad5a902a19524eb21729ed16113a9b" dependencies = [ "byteorder", "bytes", @@ -2432,31 +2444,44 @@ dependencies = [ "bit-vec", "byteorder", "indexmap", - "noodles-bgzf", + "noodles-bgzf 0.26.0", + "noodles-core", +] + +[[package]] +name = "noodles-csi" +version = "0.31.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "512e6c224fcffe4586e408b75f3f5e46fa6d5fe77a2db2afad6b3d085f6cd53a" +dependencies = [ + "bit-vec", + "byteorder", + "indexmap", + "noodles-bgzf 0.27.0", "noodles-core", ] [[package]] name = "noodles-fasta" -version = "0.32.0" +version = "0.33.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "ebb3e83e0f112d3482f5234a1eb219081f12cc3aab38a9eba00ef1846b43b63b" +checksum = "5e9e953e4e90e6c96e6a384598ebf2ab6d2f5add259ff05a194cf635e892c980" dependencies = [ "bytes", "memchr", - "noodles-bgzf", + "noodles-bgzf 0.26.0", "noodles-core", ] [[package]] name = "noodles-fasta" -version = "0.33.0" +version = "0.34.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "5e9e953e4e90e6c96e6a384598ebf2ab6d2f5add259ff05a194cf635e892c980" +checksum = "a838081c9f88c96c7a2c14c8c8a3303f282964b9e91fb53de2f3f9ef8c272b21" dependencies = [ "bytes", "memchr", - "noodles-bgzf", + "noodles-bgzf 0.27.0", "noodles-core", ] @@ -2467,9 +2492,9 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "14f8ec87fe3630f57d6d8ea24cbc2cbd0bfed1fe66238bda7a7c3fb6a36d3713" dependencies = [ "indexmap", - "noodles-bgzf", + "noodles-bgzf 0.26.0", "noodles-core", - "noodles-csi", + "noodles-csi 0.30.0", "percent-encoding", ] @@ -2482,9 +2507,23 @@ dependencies = [ "bit-vec", "byteorder", "indexmap", - "noodles-bgzf", + "noodles-bgzf 0.26.0", "noodles-core", - "noodles-csi", + "noodles-csi 0.30.0", +] + +[[package]] +name = "noodles-tabix" +version = "0.37.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "3cb9ee8ea6d8b4aa9a26a7d29fc1a22dc9afcedb95683f340236ce415f66e531" +dependencies = [ + "bit-vec", + "byteorder", + "indexmap", + "noodles-bgzf 0.27.0", + "noodles-core", + "noodles-csi 0.31.0", "tokio", ] @@ -2493,14 +2532,29 @@ name = "noodles-vcf" version = "0.49.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "2e1f2fa749afaccadc596ec55ccb7bdcd8101fa79f8382384223c0dbae3e245b" +dependencies = [ + "indexmap", + "memchr", + "noodles-bgzf 0.26.0", + "noodles-core", + "noodles-csi 0.30.0", + "noodles-tabix 0.36.0", + "percent-encoding", +] + +[[package]] +name = "noodles-vcf" +version = "0.50.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "0de3ecab40d63e5eabd2c64e34b84eb92d54e7a9e64d17f7ca2a3143f48a095c" dependencies = [ "futures", "indexmap", "memchr", - "noodles-bgzf", + "noodles-bgzf 0.27.0", "noodles-core", - "noodles-csi", - "noodles-tabix", + "noodles-csi 0.31.0", + "noodles-tabix 0.37.0", "percent-encoding", "tokio", ] @@ -3268,9 +3322,9 @@ dependencies = [ [[package]] name = "rusqlite" -version = "0.30.0" +version = "0.31.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "a78046161564f5e7cd9008aff3b2990b3850dc8e0349119b98e8f251e099f24d" +checksum = "b838eba278d213a8beaf485bd313fd580ca4505a00d5871caeb1457c55322cae" dependencies = [ "bitflags 2.4.2", "fallible-iterator 0.3.0", @@ -3400,14 +3454,14 @@ checksum = "92d43fe69e652f3df9bdc2b85b2854a0825b86e4fb76bc44d945137d053639ca" [[package]] name = "seqrepo" -version = "0.10.0" +version = "0.10.1" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "88f98fe096b30d454f0dc995ad206d67356ea23292128380252f8d76b62d4c17" +checksum = "2ea244851dc40304818438068808882d39977642e20b03137d7f98dd9e8ebd13" dependencies = [ "chrono", - "noodles-bgzf", + "noodles-bgzf 0.26.0", "noodles-core", - "noodles-fasta 0.32.0", + "noodles-fasta 0.33.0", "rusqlite", "thiserror", "tracing", diff --git a/Cargo.toml b/Cargo.toml index 14011234..7b2a5d27 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -51,12 +51,12 @@ jsonl = "4.0" lazy_static = "1.4" log = "0.4" nom = "7.1" -noodles-bgzf = { version = "0.26", features = ["async"] } +noodles-bgzf = { version = "0.27", features = ["async"] } noodles-core = "0.14" -noodles-csi = "0.30" -noodles-fasta = "0.33" -noodles-tabix = "0.36" -noodles-vcf = { version = "0.49", features = ["async"] } +noodles-csi = "0.31" +noodles-fasta = "0.34" +noodles-tabix = "0.37" +noodles-vcf = { version = "0.50", features = ["async"] } parse-display = "0.9" procfs = "0.16" prost = "0.12"