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Describe the bug
The new DRAGEN CNV VCF files provide reference-only records, see below. These don't have an INFO/SVTYPE entry. Mehari strucvars annotation fails with "SVTYPE not found".
1 123 DRAGEN:REF:1:123-345 N . . SampleFT END=345;REFLEN=xxx
To Reproduce
Steps to reproduce the behavior:
Annotate such a file.
See crash.
Expected behavior
These reference-only lines should be skipped.
In case of issues because of non-complying with . in <*> and noodles, handle them appropriately.
The deviating behaviour should be documented, at least in the source code API documentation, ideally in README.
Additional context
N/A
The text was updated successfully, but these errors were encountered:
Describe the bug
The new DRAGEN CNV VCF files provide reference-only records, see below. These don't have an
INFO/SVTYPE
entry. Mehari strucvars annotation fails with "SVTYPE not found".To Reproduce
Steps to reproduce the behavior:
Expected behavior
These reference-only lines should be skipped.
In case of issues because of non-complying with
.
in<*>
and noodles, handle them appropriately.The deviating behaviour should be documented, at least in the source code API documentation, ideally in README.
Additional context
N/A
The text was updated successfully, but these errors were encountered: