From e2fd490bc4749f697033ee398a22bd0f1b5d1fd7 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 1 Feb 2024 07:09:10 +0000 Subject: [PATCH] build(deps): bump the noodles group with 7 updates Bumps the noodles group with 7 updates: | Package | From | To | | --- | --- | --- | | [annonars](https://github.com/bihealth/annonars) | `0.30.1` | `0.34.0` | | [noodles-bgzf](https://github.com/zaeleus/noodles) | `0.25.0` | `0.26.0` | | [noodles-core](https://github.com/zaeleus/noodles) | `0.12.0` | `0.14.0` | | [noodles-csi](https://github.com/zaeleus/noodles) | `0.28.0` | `0.30.0` | | [noodles-fasta](https://github.com/zaeleus/noodles) | `0.30.0` | `0.32.0` | | [noodles-tabix](https://github.com/zaeleus/noodles) | `0.34.0` | `0.36.0` | | [noodles-vcf](https://github.com/zaeleus/noodles) | `0.47.0` | `0.49.0` | Updates `annonars` from 0.30.1 to 0.34.0 - [Release notes](https://github.com/bihealth/annonars/releases) - [Changelog](https://github.com/varfish-org/annonars/blob/main/CHANGELOG.md) - [Commits](https://github.com/bihealth/annonars/compare/v0.30.1...v0.34.0) Updates `noodles-bgzf` from 0.25.0 to 0.26.0 - [Commits](https://github.com/zaeleus/noodles/compare/noodles-bgzf-0.25.0...noodles-bgzf-0.26.0) Updates `noodles-core` from 0.12.0 to 0.14.0 - [Commits](https://github.com/zaeleus/noodles/compare/noodles-core-0.12.0...noodles-core-0.14.0) Updates `noodles-csi` from 0.28.0 to 0.30.0 - [Commits](https://github.com/zaeleus/noodles/compare/noodles-csi-0.28.0...noodles-csi-0.30.0) Updates `noodles-fasta` from 0.30.0 to 0.32.0 - [Commits](https://github.com/zaeleus/noodles/compare/noodles-fasta-0.30.0...noodles-fasta-0.32.0) Updates `noodles-tabix` from 0.34.0 to 0.36.0 - [Commits](https://github.com/zaeleus/noodles/compare/noodles-tabix-0.34.0...noodles-tabix-0.36.0) Updates `noodles-vcf` from 0.47.0 to 0.49.0 - [Commits](https://github.com/zaeleus/noodles/compare/noodles-vcf-0.47.0...noodles-vcf-0.49.0) --- updated-dependencies: - dependency-name: annonars dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-bgzf dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-core dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-csi dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-fasta dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-tabix dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles - dependency-name: noodles-vcf dependency-type: direct:production update-type: version-update:semver-minor dependency-group: noodles ... Signed-off-by: dependabot[bot] --- Cargo.lock | 144 +++++++++++++++++++++++++++++++++++++++++------------ Cargo.toml | 14 +++--- 2 files changed, 120 insertions(+), 38 deletions(-) diff --git a/Cargo.lock b/Cargo.lock index b9f09b0d..0eb0550f 100644 --- a/Cargo.lock +++ b/Cargo.lock @@ -256,9 +256,9 @@ dependencies = [ [[package]] name = "annonars" -version = "0.30.1" +version = "0.34.0" source = "registry+https://github.com/rust-lang/crates.io-index" -checksum = "e41d0f0c12a8e870bc2b0152482fc9581efb832ec016d822e62456a19a0f22c9" +checksum = "c29f48230ea3e1d20bec8cd6f31e9e2d35d793076542f08f0fccc3a5ebe43b17" dependencies = [ "actix-web", "anyhow", @@ -273,17 +273,18 @@ dependencies = [ "csv", "enum-map", "env_logger", + "erased-serde", "flate2", "indexmap 2.1.0", "indicatif", "log", "noodles-bed", - "noodles-bgzf", - "noodles-core", - "noodles-csi", + "noodles-bgzf 0.25.0", + "noodles-core 0.12.0", + "noodles-csi 0.28.0", "noodles-gff", - "noodles-tabix", - "noodles-vcf", + "noodles-tabix 0.34.0", + "noodles-vcf 0.47.0", "pbjson", "pbjson-build", "pbjson-types", @@ -1312,6 +1313,15 @@ version = "1.0.1" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "5443807d6dff69373d433ab9ef5378ad8df50ca6298caf15de6e52e24aaf54d5" +[[package]] +name = "erased-serde" +version = "0.4.2" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "55d05712b2d8d88102bc9868020c9e5c7a1f5527c452b9b97450a1d006140ba7" +dependencies = [ + "serde", +] + [[package]] name = "errno" version = "0.3.8" @@ -2135,12 +2145,12 @@ dependencies = [ "lazy_static", "log", "nom", - "noodles-bgzf", - "noodles-core", - "noodles-csi", - "noodles-fasta", - "noodles-tabix", - "noodles-vcf", + "noodles-bgzf 0.26.0", + "noodles-core 0.14.0", + "noodles-csi 0.30.0", + "noodles-fasta 0.32.0", + "noodles-tabix 0.36.0", + "noodles-vcf 0.49.0", "parse-display", "pbjson", "pbjson-build", @@ -2296,7 +2306,7 @@ version = "0.10.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "deba180b7b94c524307da91d5bc983e0ccb9a08c4e24384cc8f93e0210af254a" dependencies = [ - "noodles-core", + "noodles-core 0.12.0", ] [[package]] @@ -2304,6 +2314,18 @@ name = "noodles-bgzf" version = "0.25.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "7d578e5a173cbfac77295db4188c959966ce24a3364e009d363170d1ed44066a" +dependencies = [ + "byteorder", + "bytes", + "crossbeam-channel", + "flate2", +] + +[[package]] +name = "noodles-bgzf" +version = "0.26.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "8970db2e84adb1007377dd3988258d7a64e3fc4c05602ebf94e1f8cba207c030" dependencies = [ "byteorder", "bytes", @@ -2321,6 +2343,12 @@ version = "0.12.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "94fbe3192fe33acacabaedd387657f39b0fc606f1996d546db0dfe14703b843a" +[[package]] +name = "noodles-core" +version = "0.14.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "7336c3be652de4e05444c9b12a32331beb5ba3316e8872d92bfdd8ef3b06c282" + [[package]] name = "noodles-csi" version = "0.28.0" @@ -2330,8 +2358,21 @@ dependencies = [ "bit-vec", "byteorder", "indexmap 2.1.0", - "noodles-bgzf", - "noodles-core", + "noodles-bgzf 0.25.0", + "noodles-core 0.12.0", +] + +[[package]] +name = "noodles-csi" +version = "0.30.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "a60dfe0919f7ecbd081a82eb1d32e8f89f9041932d035fe8309073c8c01277bf" +dependencies = [ + "bit-vec", + "byteorder", + "indexmap 2.1.0", + "noodles-bgzf 0.26.0", + "noodles-core 0.14.0", ] [[package]] @@ -2342,8 +2383,20 @@ checksum = "310dcfb61e8e2cafb65d9da4b329a98a390f2b570c17599a7f4639328cfb3e2c" dependencies = [ "bytes", "memchr", - "noodles-bgzf", - "noodles-core", + "noodles-bgzf 0.25.0", + "noodles-core 0.12.0", +] + +[[package]] +name = "noodles-fasta" +version = "0.32.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "ebb3e83e0f112d3482f5234a1eb219081f12cc3aab38a9eba00ef1846b43b63b" +dependencies = [ + "bytes", + "memchr", + "noodles-bgzf 0.26.0", + "noodles-core 0.14.0", ] [[package]] @@ -2353,9 +2406,9 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "fec62bd9306cce6d551c9c7075beca940aec283efd18648b6d04860b693fd092" dependencies = [ "indexmap 2.1.0", - "noodles-bgzf", - "noodles-core", - "noodles-csi", + "noodles-bgzf 0.25.0", + "noodles-core 0.12.0", + "noodles-csi 0.28.0", "percent-encoding", ] @@ -2368,9 +2421,23 @@ dependencies = [ "bit-vec", "byteorder", "indexmap 2.1.0", - "noodles-bgzf", - "noodles-core", - "noodles-csi", + "noodles-bgzf 0.25.0", + "noodles-core 0.12.0", + "noodles-csi 0.28.0", +] + +[[package]] +name = "noodles-tabix" +version = "0.36.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "cc1ab29335a68d0c2bdf41460a67714ca69e23a1cbeb950ac5c38a9afa446a62" +dependencies = [ + "bit-vec", + "byteorder", + "indexmap 2.1.0", + "noodles-bgzf 0.26.0", + "noodles-core 0.14.0", + "noodles-csi 0.30.0", "tokio", ] @@ -2379,14 +2446,29 @@ name = "noodles-vcf" version = "0.47.0" source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "610f14797affe3ecc3687732e310ff508c909dd18d3b12d0cd135bc4cc5593e9" +dependencies = [ + "indexmap 2.1.0", + "memchr", + "noodles-bgzf 0.25.0", + "noodles-core 0.12.0", + "noodles-csi 0.28.0", + "noodles-tabix 0.34.0", + "percent-encoding", +] + +[[package]] +name = "noodles-vcf" +version = "0.49.0" +source = "registry+https://github.com/rust-lang/crates.io-index" +checksum = "2e1f2fa749afaccadc596ec55ccb7bdcd8101fa79f8382384223c0dbae3e245b" dependencies = [ "futures", "indexmap 2.1.0", "memchr", - "noodles-bgzf", - "noodles-core", - "noodles-csi", - "noodles-tabix", + "noodles-bgzf 0.26.0", + "noodles-core 0.14.0", + "noodles-csi 0.30.0", + "noodles-tabix 0.36.0", "percent-encoding", "tokio", ] @@ -3198,9 +3280,9 @@ source = "registry+https://github.com/rust-lang/crates.io-index" checksum = "f2952aee50ad05e57127f0857aa9553bbce29aea59817da2127c34ce09f6dd65" dependencies = [ "chrono", - "noodles-bgzf", - "noodles-core", - "noodles-fasta", + "noodles-bgzf 0.25.0", + "noodles-core 0.12.0", + "noodles-fasta 0.30.0", "rusqlite", "thiserror", "tracing", diff --git a/Cargo.toml b/Cargo.toml index 0c4ddae0..abc022db 100644 --- a/Cargo.toml +++ b/Cargo.toml @@ -27,7 +27,7 @@ path = "src/main.rs" [dependencies] actix-web = "4.4" -annonars = "0.30" +annonars = "0.34" anyhow = "1.0" async-compression = { version = "0.4", features = ["tokio", "gzip"] } bgzip = "0.3" @@ -51,12 +51,12 @@ jsonl = "4.0" lazy_static = "1.4" log = "0.4" nom = "7.1" -noodles-bgzf = { version = "0.25", features = ["async"] } -noodles-core = "0.12" -noodles-csi = "0.28" -noodles-fasta = "0.30" -noodles-tabix = "0.34" -noodles-vcf = { version = "0.47", features = ["async"] } +noodles-bgzf = { version = "0.26", features = ["async"] } +noodles-core = "0.14" +noodles-csi = "0.30" +noodles-fasta = "0.32" +noodles-tabix = "0.36" +noodles-vcf = { version = "0.49", features = ["async"] } parse-display = "0.8" procfs = "0.16" prost = "0.12"