docker-compose.override.yml-cadd

# Docker Compose Override YAML fragment that provides a CADD REST API
# # Server
#
# Quick Manual:
#
# - merge with docker-compose.override.yml
# - place data in the right place

# == Re-useable Definitions ==================================================

# Default service definition for all (incl. postgres/redis/...)
x-service-default: &service_default
  networks:
    - varfish
  restart: unless-stopped

# == Overide Definitions =====================================================

services:
  # -- CADD REST API ---------------------------------------------------------
  # 
  # REST API server for CADD sequence variant annotation.

  cadd-rest-api-server:
    <<: *service_default
    image: "${image_base-ghcr.io/varfish-org}/\
      ${image_cadd_name:-cadd-rest-api}:${image_cadd_version:-main}"
    env_file: cadd-rest-api.env
    command:
      - wsgi
    volumes:
      - type: bind
        source: ${volumes_basedir:-./.dev/volumes}/cadd-rest-api/db
        target: /data/db
        read_only: false

  cadd-rest-api-worker:
    <<: *service_default
    deploy:
      replicas: "${cadd_rest_api_worker_replicas:-5}"
    image: "${image_base-ghcr.io/varfish-org}/\
      ${image_cadd_name:-cadd-rest-api}:${image_cadd_version:-main}"
    env_file: cadd-rest-api.env
    command:
      - celeryd
    volumes:
      - type: bind
        source: ${volumes_basedir:-./.dev/volumes}/cadd-rest-api/data/annotations
        target: /opt/miniconda3/share/cadd-scripts-1.6.post1-0/data/annotations
        read_only: true
      - type: bind
        source: ${volumes_basedir:-./.dev/volumes}/cadd-rest-api/data/prescored
        target: /opt/miniconda3/share/cadd-scripts-1.6.post1-0/data/prescored
        read_only: true
      - type: bind
        source: ${volumes_basedir:-./.dev/volumes}/cadd-rest-api/db
        target: /data/db
        read_only: false