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 <!DOCTYPE html>
-<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Alphabetical function list · Minc2.jl</title><meta name="title" content="Alphabetical function list · Minc2.jl"/><meta property="og:title" content="Alphabetical function list · Minc2.jl"/><meta property="twitter:title" content="Alphabetical function list · Minc2.jl"/><meta name="description" content="Documentation for Minc2.jl."/><meta property="og:description" content="Documentation for Minc2.jl."/><meta property="twitter:description" content="Documentation for Minc2.jl."/><script data-outdated-warner src="../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link 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type="text/css" href="../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href="../">Minc2.jl</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">Introduction to Minc2.jl</a></li><li><a class="tocitem" href="../high_level/">High level functions</a></li><li><a class="tocitem" href="../plotting/">Plotting functions</a></li><li><a class="tocitem" href="../geo/">Gemetric transformation functions</a></li><li><a class="tocitem" href="../low_level/">Low level functions</a></li><li class="is-active"><a class="tocitem" href>Alphabetical function list</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Alphabetical function list</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Alphabetical function list</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/vfonov/Minc2.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/vfonov/Minc2.jl/blob/main/docs/src/function_list.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Index"><a class="docs-heading-anchor" href="#Index">Index</a><a id="Index-1"></a><a class="docs-heading-anchor-permalink" href="#Index" title="Permalink"></a></h1><ul><li><a href="../low_level/#Minc2.julia_to_minc2"><code>Minc2.julia_to_minc2</code></a></li><li><a href="../low_level/#Minc2.minc2_spatial"><code>Minc2.minc2_spatial</code></a></li><li><a href="../low_level/#Minc2.minc2_to_julia"><code>Minc2.minc2_to_julia</code></a></li><li><a href="../geo/#Minc2.AffineTransform-Tuple{Any, Any}"><code>Minc2.AffineTransform</code></a></li><li><a href="../geo/#Minc2.AffineTransform"><code>Minc2.AffineTransform</code></a></li><li><a href="../geo/#Minc2.AffineTransform-Tuple{Any}"><code>Minc2.AffineTransform</code></a></li><li><a href="../geo/#Minc2.AnyTransform"><code>Minc2.AnyTransform</code></a></li><li><a href="../low_level/#Minc2.DIM"><code>Minc2.DIM</code></a></li><li><a href="../geo/#Minc2.GeoTransforms"><code>Minc2.GeoTransforms</code></a></li><li><a href="../geo/#Minc2.GridTransform"><code>Minc2.GridTransform</code></a></li><li><a href="../geo/#Minc2.GridTransform-Union{Tuple{F}, Tuple{T}, Tuple{Minc2.AffineTransform{T}, Array{F, 4}}} where {T, F}"><code>Minc2.GridTransform</code></a></li><li><a href="../geo/#Minc2.GridTransform-Union{Tuple{}, Tuple{Type{T}}, Tuple{F}, Tuple{T}, Tuple{Type{T}, Type{F}}} where {T, F}"><code>Minc2.GridTransform</code></a></li><li><a href="../geo/#Minc2.IdentityTransform"><code>Minc2.IdentityTransform</code></a></li><li><a href="../geo/#Minc2.InverseGridTransform"><code>Minc2.InverseGridTransform</code></a></li><li><a href="../geo/#Minc2.InverseGridTransform-Union{Tuple{}, Tuple{Type{T}}, Tuple{F}, Tuple{T}, Tuple{Type{T}, Type{F}}} where {T, F}"><code>Minc2.InverseGridTransform</code></a></li><li><a href="../geo/#Minc2.InverseGridTransform-Union{Tuple{F}, Tuple{T}, Tuple{Minc2.AffineTransform{T}, Array{F, 4}}} where {T, F}"><code>Minc2.InverseGridTransform</code></a></li><li><a href="../low_level/#Minc2.Minc2Error"><code>Minc2.Minc2Error</code></a></li><li><a href="../low_level/#Minc2.MincHeader"><code>Minc2.MincHeader</code></a></li><li><a href="../low_level/#Minc2.STATUS"><code>Minc2.STATUS</code></a></li><li><a href="../low_level/#Minc2.TransformHandle"><code>Minc2.TransformHandle</code></a></li><li><a href="../high_level/#Minc2.Volume3D"><code>Minc2.Volume3D</code></a></li><li><a href="../low_level/#Minc2.VolumeHandle"><code>Minc2.VolumeHandle</code></a></li><li><a href="../low_level/#Minc2.XFM"><code>Minc2.XFM</code></a></li><li><a href="../geo/#Base.length-Tuple{Minc2.AnyTransform}"><code>Base.length</code></a></li><li><a href="../geo/#Base.show-Union{Tuple{I}, Tuple{F}, Tuple{T}, Tuple{IO, Minc2.GridTransform{T, F, I}}} where {T, F, I}"><code>Base.show</code></a></li><li><a href="../geo/#Base.show-Union{Tuple{I}, Tuple{F}, Tuple{T}, Tuple{IO, Minc2.InverseGridTransform{T, F, I}}} where {T, F, I}"><code>Base.show</code></a></li><li><a href="../low_level/#Minc2._hdr_convert!-Tuple{Minc2.MincHeader, Any}"><code>Minc2._hdr_convert!</code></a></li><li><a href="../low_level/#Minc2.append_grid_transform-Tuple{Minc2.TransformHandle, String}"><code>Minc2.append_grid_transform</code></a></li><li><a href="../low_level/#Minc2.append_linear_transform-Tuple{Minc2.TransformHandle, Minc2.AffineTransform}"><code>Minc2.append_linear_transform</code></a></li><li><a href="../geo/#Minc2.array-Tuple{Minc2.InverseGridTransform}"><code>Minc2.array</code></a></li><li><a href="../geo/#Minc2.array-Tuple{Minc2.GridTransform}"><code>Minc2.array</code></a></li><li><a href="../high_level/#Minc2.array"><code>Minc2.array</code></a></li><li><a href="../low_level/#Minc2.attributes-Tuple{Minc2.VolumeHandle, String}"><code>Minc2.attributes</code></a></li><li><a href="../high_level/#Minc2.calculate_jacobian"><code>Minc2.calculate_jacobian</code></a></li><li><a href="../high_level/#Minc2.calculate_jacobian!"><code>Minc2.calculate_jacobian!</code></a></li><li><a href="../low_level/#Minc2.close_minc_file-Tuple{Minc2.VolumeHandle}"><code>Minc2.close_minc_file</code></a></li><li><a href="../low_level/#Minc2.concat_xfm-Tuple{Minc2.TransformHandle, Minc2.TransformHandle}"><code>Minc2.concat_xfm</code></a></li><li><a href="../low_level/#Minc2.copy_minc_metadata-Tuple{Minc2.VolumeHandle, Minc2.VolumeHandle}"><code>Minc2.copy_minc_metadata</code></a></li><li><a href="../low_level/#Minc2.create_header_from_v2w-Union{Tuple{T}, Tuple{Any, Minc2.AffineTransform{T}}} where T"><code>Minc2.create_header_from_v2w</code></a></li><li><a href="../low_level/#Minc2.create_minc_file-Tuple{Minc2.VolumeHandle, AbstractString}"><code>Minc2.create_minc_file</code></a></li><li><a href="../high_level/#Minc2.crop_volume"><code>Minc2.crop_volume</code></a></li><li><a href="../geo/#Minc2.decompose-Union{Tuple{Minc2.AffineTransform{T}}, Tuple{T}} where T"><code>Minc2.decompose</code></a></li><li><a href="../geo/#Minc2.decompose-Union{Tuple{Matrix{T}}, Tuple{T}} where T"><code>Minc2.decompose</code></a></li><li><a href="../geo/#Minc2.decompose-Tuple{Any, Any}"><code>Minc2.decompose</code></a></li><li><a href="../low_level/#Minc2.define_minc_file-Union{Tuple{Minc2.MincHeader}, Tuple{Repr}, Tuple{Store}, Tuple{Minc2.MincHeader, Type{Store}}, Tuple{Minc2.MincHeader, Type{Store}, Type{Repr}}} where {Store, Repr}"><code>Minc2.define_minc_file</code></a></li><li><a href="../plotting/#Minc2.draw_outline_with_heatmap"><code>Minc2.draw_outline_with_heatmap</code></a></li><li><a href="../plotting/#Minc2.draw_outline_with_heatmap_symmetric"><code>Minc2.draw_outline_with_heatmap_symmetric</code></a></li><li><a href="../plotting/#Minc2.draw_outline_with_labels"><code>Minc2.draw_outline_with_labels</code></a></li><li><a href="../low_level/#Minc2.empty_like_minc_volume_raw-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.empty_like_minc_volume_raw</code></a></li><li><a href="../low_level/#Minc2.empty_like_minc_volume_raw-Union{Tuple{Minc2.VolumeHandle}, Tuple{T}, Tuple{Minc2.VolumeHandle, Type{T}}} where T"><code>Minc2.empty_like_minc_volume_raw</code></a></li><li><a href="../low_level/#Minc2.empty_like_minc_volume_std-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.empty_like_minc_volume_std</code></a></li><li><a href="../low_level/#Minc2.empty_like_minc_volume_std-Union{Tuple{Minc2.VolumeHandle}, Tuple{T}, Tuple{Minc2.VolumeHandle, Type{T}}} where T"><code>Minc2.empty_like_minc_volume_std</code></a></li><li><a href="../low_level/#Minc2.empty_like_minc_volume_std_history-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.empty_like_minc_volume_std_history</code></a></li><li><a href="../high_level/#Minc2.empty_volume_like"><code>Minc2.empty_volume_like</code></a></li><li><a href="../high_level/#Minc2.full_volume_like"><code>Minc2.full_volume_like</code></a></li><li><a href="../low_level/#Minc2.get_attribute-Tuple{Minc2.VolumeHandle, String, String}"><code>Minc2.get_attribute</code></a></li><li><a href="../low_level/#Minc2.get_grid_transform-Tuple{Minc2.TransformHandle}"><code>Minc2.get_grid_transform</code></a></li><li><a href="../low_level/#Minc2.get_linear_transform-Tuple{Minc2.TransformHandle}"><code>Minc2.get_linear_transform</code></a></li><li><a href="../low_level/#Minc2.get_linear_transform_param-Tuple{Minc2.TransformHandle}"><code>Minc2.get_linear_transform_param</code></a></li><li><a href="../low_level/#Minc2.get_n_concat-Tuple{Minc2.TransformHandle}"><code>Minc2.get_n_concat</code></a></li><li><a href="../low_level/#Minc2.get_n_type-Tuple{Minc2.TransformHandle}"><code>Minc2.get_n_type</code></a></li><li><a href="../low_level/#Minc2.groups-Tuple{Minc2.VolumeHandle}"><code>Minc2.groups</code></a></li><li><a href="../high_level/#Minc2.history"><code>Minc2.history</code></a></li><li><a href="../geo/#Minc2.interpolate_field-Union{Tuple{I}, Tuple{T}, Tuple{Minc2.AffineTransform{T}, I, StaticArraysCore.SVector{3, T}}} where {T, I&lt;:Interpolations.Extrapolation}"><code>Minc2.interpolate_field</code></a></li><li><a href="../geo/#Minc2.inv-Tuple{Minc2.IdentityTransform}"><code>Minc2.inv</code></a></li><li><a href="../geo/#Minc2.inv-Union{Tuple{Vector{T}}, Tuple{T}} where T&lt;:Minc2.AnyTransform"><code>Minc2.inv</code></a></li><li><a href="../geo/#Minc2.inv-Union{Tuple{Minc2.InverseGridTransform{T, F, VF}}, Tuple{VF}, Tuple{F}, Tuple{T}} where {T, F, VF}"><code>Minc2.inv</code></a></li><li><a href="../geo/#Minc2.inv-Union{Tuple{Minc2.GridTransform{T, F, VF}}, Tuple{VF}, Tuple{F}, Tuple{T}} where {T, F, VF}"><code>Minc2.inv</code></a></li><li><a href="../geo/#Minc2.inv-Union{Tuple{Minc2.AffineTransform{T}}, Tuple{T}} where T"><code>Minc2.inv</code></a></li><li><a href="../low_level/#Minc2.inverse_transform_point-Tuple{Minc2.TransformHandle, Vector{Float64}}"><code>Minc2.inverse_transform_point</code></a></li><li><a href="../low_level/#Minc2.invert_transform-Tuple{Minc2.TransformHandle}"><code>Minc2.invert_transform</code></a></li><li><a href="../low_level/#Minc2.load_transforms-Tuple{Minc2.TransformHandle}"><code>Minc2.load_transforms</code></a></li><li><a href="../low_level/#Minc2.load_transforms-Tuple{String}"><code>Minc2.load_transforms</code></a></li><li><a href="../low_level/#Minc2.ndim-Tuple{Minc2.VolumeHandle}"><code>Minc2.ndim</code></a></li><li><a href="../high_level/#Minc2.normalize_tfm"><code>Minc2.normalize_tfm</code></a></li><li><a href="../low_level/#Minc2.open_minc_file-Tuple{String}"><code>Minc2.open_minc_file</code></a></li><li><a href="../low_level/#Minc2.open_xfm_file-Tuple{String}"><code>Minc2.open_xfm_file</code></a></li><li><a href="../high_level/#Minc2.read_ants_transform"><code>Minc2.read_ants_transform</code></a></li><li><a href="../low_level/#Minc2.read_attribute-Tuple{Minc2.VolumeHandle, String, String}"><code>Minc2.read_attribute</code></a></li><li><a href="../low_level/#Minc2.read_history-Tuple{Minc2.VolumeHandle}"><code>Minc2.read_history</code></a></li><li><a href="../high_level/#Minc2.read_itk_nifti_transform"><code>Minc2.read_itk_nifti_transform</code></a></li><li><a href="../low_level/#Minc2.read_minc_volume_raw-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.read_minc_volume_raw</code></a></li><li><a href="../low_level/#Minc2.read_minc_volume_raw-Union{Tuple{Minc2.VolumeHandle}, Tuple{T}, Tuple{Minc2.VolumeHandle, Type{T}}} where T"><code>Minc2.read_minc_volume_raw</code></a></li><li><a href="../low_level/#Minc2.read_minc_volume_raw_history-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.read_minc_volume_raw_history</code></a></li><li><a href="../low_level/#Minc2.read_minc_volume_std-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.read_minc_volume_std</code></a></li><li><a href="../low_level/#Minc2.read_minc_volume_std-Union{Tuple{Minc2.VolumeHandle}, Tuple{T}, Tuple{Minc2.VolumeHandle, Type{T}}} where T"><code>Minc2.read_minc_volume_std</code></a></li><li><a href="../low_level/#Minc2.read_minc_volume_std_history-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.read_minc_volume_std_history</code></a></li><li><a href="../high_level/#Minc2.read_nifti_volume"><code>Minc2.read_nifti_volume</code></a></li><li><a href="../high_level/#Minc2.read_transforms"><code>Minc2.read_transforms</code></a></li><li><a href="../low_level/#Minc2.read_transforms-Tuple{String}"><code>Minc2.read_transforms</code></a></li><li><a href="../high_level/#Minc2.read_volume"><code>Minc2.read_volume</code></a></li><li><a href="../low_level/#Minc2.representation_header-Tuple{Minc2.VolumeHandle}"><code>Minc2.representation_header</code></a></li><li><a href="../high_level/#Minc2.resample_grid"><code>Minc2.resample_grid</code></a></li><li><a href="../high_level/#Minc2.resample_grid!"><code>Minc2.resample_grid!</code></a></li><li><a href="../high_level/#Minc2.resample_volume"><code>Minc2.resample_volume</code></a></li><li><a href="../high_level/#Minc2.resample_volume!"><code>Minc2.resample_volume!</code></a></li><li><a href="../high_level/#Minc2.save_itk_nifti_transform"><code>Minc2.save_itk_nifti_transform</code></a></li><li><a href="../high_level/#Minc2.save_itk_txt_transform"><code>Minc2.save_itk_txt_transform</code></a></li><li><a href="../high_level/#Minc2.save_nifti_volume"><code>Minc2.save_nifti_volume</code></a></li><li><a href="../high_level/#Minc2.save_transforms"><code>Minc2.save_transforms</code></a></li><li><a href="../low_level/#Minc2.save_transforms-Union{Tuple{XFM}, Tuple{T}, Tuple{String, Union{Vector{XFM}, XFM}}} where {T, XFM&lt;:Minc2.AnyTransform}"><code>Minc2.save_transforms</code></a></li><li><a href="../high_level/#Minc2.save_volume"><code>Minc2.save_volume</code></a></li><li><a href="../low_level/#Minc2.save_xfm_file-Tuple{Minc2.TransformHandle, String}"><code>Minc2.save_xfm_file</code></a></li><li><a href="../low_level/#Minc2.setup_standard_order-Tuple{Minc2.VolumeHandle}"><code>Minc2.setup_standard_order</code></a></li><li><a href="../low_level/#Minc2.store_header-Tuple{Minc2.VolumeHandle}"><code>Minc2.store_header</code></a></li><li><a href="../high_level/#Minc2.tfm_to_grid"><code>Minc2.tfm_to_grid</code></a></li><li><a href="../geo/#Minc2.transform_point-Union{Tuple{T}, Tuple{XFM}, Tuple{Vector{XFM}, StaticArraysCore.SVector{3, T}}} where {XFM&lt;:Minc2.AnyTransform, T}"><code>Minc2.transform_point</code></a></li><li><a href="../geo/#Minc2.transform_point-Union{Tuple{F}, Tuple{T}, Tuple{Minc2.InverseGridTransform{T, F, VF} where VF, StaticArraysCore.SVector{3, T}}} where {T, F}"><code>Minc2.transform_point</code></a></li><li><a href="../geo/#Minc2.transform_point-Union{Tuple{T}, Tuple{Minc2.IdentityTransform, StaticArraysCore.SVector{3, T}}} where T"><code>Minc2.transform_point</code></a></li><li><a href="../low_level/#Minc2.transform_point-Tuple{Minc2.TransformHandle, Vector{Float64}}"><code>Minc2.transform_point</code></a></li><li><a href="../geo/#Minc2.transform_point-Union{Tuple{T}, Tuple{Minc2.AffineTransform{T}, StaticArraysCore.SVector{3, T}}} where T"><code>Minc2.transform_point</code></a></li><li><a href="../geo/#Minc2.transform_point-Union{Tuple{T}, Tuple{Minc2.AffineTransform{T}, CartesianIndex{3}}} where T"><code>Minc2.transform_point</code></a></li><li><a href="../geo/#Minc2.transform_point-Union{Tuple{F}, Tuple{T}, Tuple{Minc2.GridTransform{T, F, I} where I, StaticArraysCore.SVector{3, T}}} where {T, F}"><code>Minc2.transform_point</code></a></li><li><a href="../high_level/#Minc2.voxel_to_world"><code>Minc2.voxel_to_world</code></a></li><li><a href="../low_level/#Minc2.voxel_to_world-Tuple{Minc2.MincHeader}"><code>Minc2.voxel_to_world</code></a></li><li><a href="../geo/#Minc2.voxel_to_world-Tuple{Minc2.GridTransform}"><code>Minc2.voxel_to_world</code></a></li><li><a href="../low_level/#Minc2.voxel_to_world-Tuple{Minc2.VolumeHandle, Vector{Float64}}"><code>Minc2.voxel_to_world</code></a></li><li><a href="../geo/#Minc2.voxel_to_world-Tuple{Minc2.InverseGridTransform}"><code>Minc2.voxel_to_world</code></a></li><li><a href="../high_level/#Minc2.world_to_voxel"><code>Minc2.world_to_voxel</code></a></li><li><a href="../geo/#Minc2.world_to_voxel-Tuple{Minc2.InverseGridTransform}"><code>Minc2.world_to_voxel</code></a></li><li><a href="../low_level/#Minc2.world_to_voxel-Tuple{Minc2.VolumeHandle, Vector{Float64}}"><code>Minc2.world_to_voxel</code></a></li><li><a href="../geo/#Minc2.world_to_voxel-Tuple{Minc2.GridTransform}"><code>Minc2.world_to_voxel</code></a></li><li><a href="../low_level/#Minc2.world_to_voxel-Tuple{Minc2.MincHeader}"><code>Minc2.world_to_voxel</code></a></li><li><a href="../low_level/#Minc2.write_attribute-Union{Tuple{T}, Tuple{Minc2.VolumeHandle, String, String, T}} where T"><code>Minc2.write_attribute</code></a></li><li><a href="../low_level/#Minc2.write_history-Tuple{Minc2.VolumeHandle, String}"><code>Minc2.write_history</code></a></li><li><a href="../low_level/#Minc2.write_minc_volume_raw-Union{Tuple{T}, Tuple{Minc2.VolumeHandle, Array{T, N} where N}} where T"><code>Minc2.write_minc_volume_raw</code></a></li><li><a href="../low_level/#Minc2.write_minc_volume_raw-Union{Tuple{Repr}, Tuple{Store}, Tuple{String, Type{Store}, Union{Nothing, Minc2.MincHeader}, Array{Repr, N} where N}} where {Store, Repr}"><code>Minc2.write_minc_volume_raw</code></a></li><li><a href="../low_level/#Minc2.write_minc_volume_std-Union{Tuple{Repr}, Tuple{Store}, Tuple{String, Type{Store}, Union{Nothing, Minc2.MincHeader}, Array{Repr, N} where N}} where {Store, Repr}"><code>Minc2.write_minc_volume_std</code></a></li><li><a href="../low_level/#Minc2.write_minc_volume_std-Union{Tuple{T}, Tuple{Minc2.VolumeHandle, Array{T, N} where N}} where T"><code>Minc2.write_minc_volume_std</code></a></li><li><a href="../low_level/#Minc2.@minc2_check-Tuple{Any}"><code>Minc2.@minc2_check</code></a></li></ul></article><nav class="docs-footer"><a 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+<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>Alphabetical function list · Minc2.jl</title><meta name="title" content="Alphabetical function list · Minc2.jl"/><meta property="og:title" content="Alphabetical function list · Minc2.jl"/><meta property="twitter:title" content="Alphabetical function list · Minc2.jl"/><meta name="description" content="Documentation for Minc2.jl."/><meta property="og:description" content="Documentation for Minc2.jl."/><meta property="twitter:description" content="Documentation for Minc2.jl."/><script data-outdated-warner src="../assets/warner.js"></script><link href="https://cdnjs.cloudflare.com/ajax/libs/lato-font/3.0.0/css/lato-font.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/juliamono/0.050/juliamono.min.css" rel="stylesheet" type="text/css"/><link 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type="text/css" href="../assets/themes/documenter-light.css" data-theme-name="documenter-light" data-theme-primary/><script src="../assets/themeswap.js"></script></head><body><div id="documenter"><nav class="docs-sidebar"><div class="docs-package-name"><span class="docs-autofit"><a href="../">Minc2.jl</a></span></div><button class="docs-search-query input is-rounded is-small is-clickable my-2 mx-auto py-1 px-2" id="documenter-search-query">Search docs (Ctrl + /)</button><ul class="docs-menu"><li><a class="tocitem" href="../">Introduction to Minc2.jl</a></li><li><a class="tocitem" href="../high_level/">High level functions</a></li><li><a class="tocitem" href="../plotting/">Plotting functions</a></li><li><a class="tocitem" href="../geo/">Gemetric transformation functions</a></li><li><a class="tocitem" href="../low_level/">Low level functions</a></li><li class="is-active"><a class="tocitem" href>Alphabetical function list</a></li></ul><div class="docs-version-selector field has-addons"><div class="control"><span class="docs-label button is-static is-size-7">Version</span></div><div class="docs-selector control is-expanded"><div class="select is-fullwidth is-size-7"><select id="documenter-version-selector"></select></div></div></div></nav><div class="docs-main"><header class="docs-navbar"><a class="docs-sidebar-button docs-navbar-link fa-solid fa-bars is-hidden-desktop" id="documenter-sidebar-button" href="#"></a><nav class="breadcrumb"><ul class="is-hidden-mobile"><li class="is-active"><a href>Alphabetical function list</a></li></ul><ul class="is-hidden-tablet"><li class="is-active"><a href>Alphabetical function list</a></li></ul></nav><div class="docs-right"><a class="docs-navbar-link" href="https://github.com/vfonov/Minc2.jl" title="View the repository on GitHub"><span class="docs-icon fa-brands"></span><span class="docs-label is-hidden-touch">GitHub</span></a><a class="docs-navbar-link" href="https://github.com/vfonov/Minc2.jl/blob/main/docs/src/function_list.md" title="Edit source on GitHub"><span class="docs-icon fa-solid"></span></a><a class="docs-settings-button docs-navbar-link fa-solid fa-gear" id="documenter-settings-button" href="#" title="Settings"></a><a class="docs-article-toggle-button fa-solid fa-chevron-up" id="documenter-article-toggle-button" href="javascript:;" title="Collapse all docstrings"></a></div></header><article class="content" id="documenter-page"><h1 id="Index"><a class="docs-heading-anchor" href="#Index">Index</a><a id="Index-1"></a><a class="docs-heading-anchor-permalink" href="#Index" title="Permalink"></a></h1><ul><li><a href="../low_level/#Minc2.julia_to_minc2"><code>Minc2.julia_to_minc2</code></a></li><li><a href="../low_level/#Minc2.minc2_spatial"><code>Minc2.minc2_spatial</code></a></li><li><a href="../low_level/#Minc2.minc2_to_julia"><code>Minc2.minc2_to_julia</code></a></li><li><a href="../geo/#Minc2.AffineTransform-Tuple{Any}"><code>Minc2.AffineTransform</code></a></li><li><a href="../geo/#Minc2.AffineTransform-Tuple{Any, Any}"><code>Minc2.AffineTransform</code></a></li><li><a href="../geo/#Minc2.AffineTransform"><code>Minc2.AffineTransform</code></a></li><li><a href="../geo/#Minc2.AnyTransform"><code>Minc2.AnyTransform</code></a></li><li><a href="../low_level/#Minc2.DIM"><code>Minc2.DIM</code></a></li><li><a href="../geo/#Minc2.GeoTransforms"><code>Minc2.GeoTransforms</code></a></li><li><a href="../geo/#Minc2.GridTransform-Union{Tuple{}, Tuple{Type{T}}, Tuple{F}, Tuple{T}, Tuple{Type{T}, Type{F}}} where {T, F}"><code>Minc2.GridTransform</code></a></li><li><a href="../geo/#Minc2.GridTransform"><code>Minc2.GridTransform</code></a></li><li><a href="../geo/#Minc2.GridTransform-Union{Tuple{F}, Tuple{T}, Tuple{Minc2.AffineTransform{T}, Array{F, 4}}} where {T, F}"><code>Minc2.GridTransform</code></a></li><li><a href="../geo/#Minc2.IdentityTransform"><code>Minc2.IdentityTransform</code></a></li><li><a href="../geo/#Minc2.InverseGridTransform-Union{Tuple{}, Tuple{Type{T}}, Tuple{F}, Tuple{T}, Tuple{Type{T}, Type{F}}} where {T, F}"><code>Minc2.InverseGridTransform</code></a></li><li><a href="../geo/#Minc2.InverseGridTransform-Union{Tuple{F}, Tuple{T}, Tuple{Minc2.AffineTransform{T}, Array{F, 4}}} where {T, F}"><code>Minc2.InverseGridTransform</code></a></li><li><a href="../geo/#Minc2.InverseGridTransform"><code>Minc2.InverseGridTransform</code></a></li><li><a href="../low_level/#Minc2.Minc2Error"><code>Minc2.Minc2Error</code></a></li><li><a href="../low_level/#Minc2.MincHeader"><code>Minc2.MincHeader</code></a></li><li><a href="../low_level/#Minc2.STATUS"><code>Minc2.STATUS</code></a></li><li><a href="../low_level/#Minc2.TransformHandle"><code>Minc2.TransformHandle</code></a></li><li><a href="../high_level/#Minc2.Volume3D"><code>Minc2.Volume3D</code></a></li><li><a href="../low_level/#Minc2.VolumeHandle"><code>Minc2.VolumeHandle</code></a></li><li><a href="../low_level/#Minc2.XFM"><code>Minc2.XFM</code></a></li><li><a href="../geo/#Base.length-Tuple{Minc2.AnyTransform}"><code>Base.length</code></a></li><li><a href="../geo/#Base.show-Union{Tuple{I}, Tuple{F}, Tuple{T}, Tuple{IO, Minc2.InverseGridTransform{T, F, I}}} where {T, F, I}"><code>Base.show</code></a></li><li><a href="../geo/#Base.show-Union{Tuple{I}, Tuple{F}, Tuple{T}, Tuple{IO, Minc2.GridTransform{T, F, I}}} where {T, F, I}"><code>Base.show</code></a></li><li><a href="../low_level/#Minc2._hdr_convert!-Tuple{Minc2.MincHeader, Any}"><code>Minc2._hdr_convert!</code></a></li><li><a href="../low_level/#Minc2.append_grid_transform-Tuple{Minc2.TransformHandle, String}"><code>Minc2.append_grid_transform</code></a></li><li><a href="../low_level/#Minc2.append_linear_transform-Tuple{Minc2.TransformHandle, Minc2.AffineTransform}"><code>Minc2.append_linear_transform</code></a></li><li><a href="../geo/#Minc2.array-Tuple{Minc2.InverseGridTransform}"><code>Minc2.array</code></a></li><li><a href="../high_level/#Minc2.array"><code>Minc2.array</code></a></li><li><a href="../geo/#Minc2.array-Tuple{Minc2.GridTransform}"><code>Minc2.array</code></a></li><li><a href="../low_level/#Minc2.attributes-Tuple{Minc2.VolumeHandle, String}"><code>Minc2.attributes</code></a></li><li><a href="../high_level/#Minc2.calculate_jacobian"><code>Minc2.calculate_jacobian</code></a></li><li><a href="../high_level/#Minc2.calculate_jacobian!"><code>Minc2.calculate_jacobian!</code></a></li><li><a href="../low_level/#Minc2.close_minc_file-Tuple{Minc2.VolumeHandle}"><code>Minc2.close_minc_file</code></a></li><li><a href="../low_level/#Minc2.concat_xfm-Tuple{Minc2.TransformHandle, Minc2.TransformHandle}"><code>Minc2.concat_xfm</code></a></li><li><a href="../low_level/#Minc2.copy_minc_metadata-Tuple{Minc2.VolumeHandle, Minc2.VolumeHandle}"><code>Minc2.copy_minc_metadata</code></a></li><li><a href="../low_level/#Minc2.create_header_from_v2w-Union{Tuple{T}, Tuple{Any, Minc2.AffineTransform{T}}} where T"><code>Minc2.create_header_from_v2w</code></a></li><li><a href="../low_level/#Minc2.create_minc_file-Tuple{Minc2.VolumeHandle, AbstractString}"><code>Minc2.create_minc_file</code></a></li><li><a href="../high_level/#Minc2.crop_volume"><code>Minc2.crop_volume</code></a></li><li><a href="../geo/#Minc2.decompose-Tuple{Any, Any}"><code>Minc2.decompose</code></a></li><li><a href="../geo/#Minc2.decompose-Union{Tuple{Matrix{T}}, Tuple{T}} where T"><code>Minc2.decompose</code></a></li><li><a href="../geo/#Minc2.decompose-Union{Tuple{Minc2.AffineTransform{T}}, Tuple{T}} where T"><code>Minc2.decompose</code></a></li><li><a href="../low_level/#Minc2.define_minc_file-Union{Tuple{Minc2.MincHeader}, Tuple{Repr}, Tuple{Store}, Tuple{Minc2.MincHeader, Type{Store}}, Tuple{Minc2.MincHeader, Type{Store}, Type{Repr}}} where {Store, Repr}"><code>Minc2.define_minc_file</code></a></li><li><a href="../plotting/#Minc2.draw_outline_with_heatmap"><code>Minc2.draw_outline_with_heatmap</code></a></li><li><a href="../plotting/#Minc2.draw_outline_with_heatmap_symmetric"><code>Minc2.draw_outline_with_heatmap_symmetric</code></a></li><li><a href="../plotting/#Minc2.draw_outline_with_labels"><code>Minc2.draw_outline_with_labels</code></a></li><li><a href="../low_level/#Minc2.empty_like_minc_volume_raw-Union{Tuple{Minc2.VolumeHandle}, Tuple{T}, Tuple{Minc2.VolumeHandle, Type{T}}} where T"><code>Minc2.empty_like_minc_volume_raw</code></a></li><li><a href="../low_level/#Minc2.empty_like_minc_volume_raw-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.empty_like_minc_volume_raw</code></a></li><li><a href="../low_level/#Minc2.empty_like_minc_volume_std-Union{Tuple{Minc2.VolumeHandle}, Tuple{T}, Tuple{Minc2.VolumeHandle, Type{T}}} where T"><code>Minc2.empty_like_minc_volume_std</code></a></li><li><a href="../low_level/#Minc2.empty_like_minc_volume_std-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.empty_like_minc_volume_std</code></a></li><li><a href="../low_level/#Minc2.empty_like_minc_volume_std_history-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.empty_like_minc_volume_std_history</code></a></li><li><a href="../high_level/#Minc2.empty_volume_like"><code>Minc2.empty_volume_like</code></a></li><li><a href="../high_level/#Minc2.full_volume_like"><code>Minc2.full_volume_like</code></a></li><li><a href="../low_level/#Minc2.get_attribute-Tuple{Minc2.VolumeHandle, String, String}"><code>Minc2.get_attribute</code></a></li><li><a href="../low_level/#Minc2.get_grid_transform-Tuple{Minc2.TransformHandle}"><code>Minc2.get_grid_transform</code></a></li><li><a href="../low_level/#Minc2.get_linear_transform-Tuple{Minc2.TransformHandle}"><code>Minc2.get_linear_transform</code></a></li><li><a href="../low_level/#Minc2.get_linear_transform_param-Tuple{Minc2.TransformHandle}"><code>Minc2.get_linear_transform_param</code></a></li><li><a href="../low_level/#Minc2.get_n_concat-Tuple{Minc2.TransformHandle}"><code>Minc2.get_n_concat</code></a></li><li><a href="../low_level/#Minc2.get_n_type-Tuple{Minc2.TransformHandle}"><code>Minc2.get_n_type</code></a></li><li><a href="../low_level/#Minc2.groups-Tuple{Minc2.VolumeHandle}"><code>Minc2.groups</code></a></li><li><a href="../high_level/#Minc2.history"><code>Minc2.history</code></a></li><li><a href="../geo/#Minc2.interpolate_field-Union{Tuple{I}, Tuple{T}, Tuple{Minc2.AffineTransform{T}, I, StaticArraysCore.SVector{3, T}}} where {T, I&lt;:Interpolations.Extrapolation}"><code>Minc2.interpolate_field</code></a></li><li><a href="../geo/#Minc2.inv-Union{Tuple{Minc2.AffineTransform{T}}, Tuple{T}} where T"><code>Minc2.inv</code></a></li><li><a href="../geo/#Minc2.inv-Union{Tuple{Minc2.GridTransform{T, F, VF}}, Tuple{VF}, Tuple{F}, Tuple{T}} where {T, F, VF}"><code>Minc2.inv</code></a></li><li><a href="../geo/#Minc2.inv-Union{Tuple{Minc2.InverseGridTransform{T, F, VF}}, Tuple{VF}, Tuple{F}, Tuple{T}} where {T, F, VF}"><code>Minc2.inv</code></a></li><li><a href="../geo/#Minc2.inv-Union{Tuple{Vector{T}}, Tuple{T}} where T&lt;:Minc2.AnyTransform"><code>Minc2.inv</code></a></li><li><a href="../geo/#Minc2.inv-Tuple{Minc2.IdentityTransform}"><code>Minc2.inv</code></a></li><li><a href="../low_level/#Minc2.inverse_transform_point-Tuple{Minc2.TransformHandle, Vector{Float64}}"><code>Minc2.inverse_transform_point</code></a></li><li><a href="../low_level/#Minc2.invert_transform-Tuple{Minc2.TransformHandle}"><code>Minc2.invert_transform</code></a></li><li><a href="../low_level/#Minc2.load_transforms-Tuple{Minc2.TransformHandle}"><code>Minc2.load_transforms</code></a></li><li><a href="../low_level/#Minc2.load_transforms-Tuple{String}"><code>Minc2.load_transforms</code></a></li><li><a href="../low_level/#Minc2.ndim-Tuple{Minc2.VolumeHandle}"><code>Minc2.ndim</code></a></li><li><a href="../high_level/#Minc2.normalize_tfm"><code>Minc2.normalize_tfm</code></a></li><li><a href="../low_level/#Minc2.open_minc_file-Tuple{String}"><code>Minc2.open_minc_file</code></a></li><li><a href="../low_level/#Minc2.open_xfm_file-Tuple{String}"><code>Minc2.open_xfm_file</code></a></li><li><a href="../high_level/#Minc2.read_ants_transform"><code>Minc2.read_ants_transform</code></a></li><li><a href="../low_level/#Minc2.read_attribute-Tuple{Minc2.VolumeHandle, String, String}"><code>Minc2.read_attribute</code></a></li><li><a href="../low_level/#Minc2.read_history-Tuple{Minc2.VolumeHandle}"><code>Minc2.read_history</code></a></li><li><a href="../high_level/#Minc2.read_itk_nifti_transform"><code>Minc2.read_itk_nifti_transform</code></a></li><li><a href="../low_level/#Minc2.read_minc_volume_raw-Union{Tuple{Minc2.VolumeHandle}, Tuple{T}, Tuple{Minc2.VolumeHandle, Type{T}}} where T"><code>Minc2.read_minc_volume_raw</code></a></li><li><a href="../low_level/#Minc2.read_minc_volume_raw-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.read_minc_volume_raw</code></a></li><li><a href="../low_level/#Minc2.read_minc_volume_raw_history-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.read_minc_volume_raw_history</code></a></li><li><a href="../low_level/#Minc2.read_minc_volume_std-Union{Tuple{Minc2.VolumeHandle}, Tuple{T}, Tuple{Minc2.VolumeHandle, Type{T}}} where T"><code>Minc2.read_minc_volume_std</code></a></li><li><a href="../low_level/#Minc2.read_minc_volume_std-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.read_minc_volume_std</code></a></li><li><a href="../low_level/#Minc2.read_minc_volume_std_history-Union{Tuple{String}, Tuple{T}, Tuple{String, Type{T}}} where T"><code>Minc2.read_minc_volume_std_history</code></a></li><li><a href="../high_level/#Minc2.read_nifti_volume"><code>Minc2.read_nifti_volume</code></a></li><li><a href="../low_level/#Minc2.read_transforms-Tuple{String}"><code>Minc2.read_transforms</code></a></li><li><a href="../high_level/#Minc2.read_transforms"><code>Minc2.read_transforms</code></a></li><li><a href="../high_level/#Minc2.read_volume"><code>Minc2.read_volume</code></a></li><li><a href="../low_level/#Minc2.representation_header-Tuple{Minc2.VolumeHandle}"><code>Minc2.representation_header</code></a></li><li><a href="../high_level/#Minc2.resample_grid"><code>Minc2.resample_grid</code></a></li><li><a href="../high_level/#Minc2.resample_grid!"><code>Minc2.resample_grid!</code></a></li><li><a href="../high_level/#Minc2.resample_volume"><code>Minc2.resample_volume</code></a></li><li><a href="../high_level/#Minc2.resample_volume!"><code>Minc2.resample_volume!</code></a></li><li><a href="../high_level/#Minc2.save_itk_nifti_transform"><code>Minc2.save_itk_nifti_transform</code></a></li><li><a href="../high_level/#Minc2.save_itk_txt_transform"><code>Minc2.save_itk_txt_transform</code></a></li><li><a href="../high_level/#Minc2.save_nifti_volume"><code>Minc2.save_nifti_volume</code></a></li><li><a href="../high_level/#Minc2.save_transforms"><code>Minc2.save_transforms</code></a></li><li><a href="../low_level/#Minc2.save_transforms-Union{Tuple{XFM}, Tuple{T}, Tuple{String, Union{Vector{XFM}, XFM}}} where {T, XFM&lt;:Minc2.AnyTransform}"><code>Minc2.save_transforms</code></a></li><li><a href="../high_level/#Minc2.save_volume"><code>Minc2.save_volume</code></a></li><li><a href="../low_level/#Minc2.save_xfm_file-Tuple{Minc2.TransformHandle, String}"><code>Minc2.save_xfm_file</code></a></li><li><a href="../low_level/#Minc2.setup_standard_order-Tuple{Minc2.VolumeHandle}"><code>Minc2.setup_standard_order</code></a></li><li><a href="../low_level/#Minc2.store_header-Tuple{Minc2.VolumeHandle}"><code>Minc2.store_header</code></a></li><li><a href="../high_level/#Minc2.tfm_to_grid"><code>Minc2.tfm_to_grid</code></a></li><li><a href="../geo/#Minc2.transform_point-Union{Tuple{F}, Tuple{T}, Tuple{Minc2.GridTransform{T, F, I} where I, StaticArraysCore.SVector{3, T}}} where {T, F}"><code>Minc2.transform_point</code></a></li><li><a href="../geo/#Minc2.transform_point-Union{Tuple{T}, Tuple{Minc2.AffineTransform{T}, CartesianIndex{3}}} where T"><code>Minc2.transform_point</code></a></li><li><a href="../geo/#Minc2.transform_point-Union{Tuple{T}, Tuple{Minc2.AffineTransform{T}, StaticArraysCore.SVector{3, T}}} where T"><code>Minc2.transform_point</code></a></li><li><a href="../geo/#Minc2.transform_point-Union{Tuple{T}, Tuple{Minc2.IdentityTransform, StaticArraysCore.SVector{3, T}}} where T"><code>Minc2.transform_point</code></a></li><li><a href="../geo/#Minc2.transform_point-Union{Tuple{T}, Tuple{XFM}, Tuple{Vector{XFM}, StaticArraysCore.SVector{3, T}}} where {XFM&lt;:Minc2.AnyTransform, T}"><code>Minc2.transform_point</code></a></li><li><a href="../geo/#Minc2.transform_point-Union{Tuple{F}, Tuple{T}, Tuple{Minc2.InverseGridTransform{T, F, VF} where VF, StaticArraysCore.SVector{3, T}}} where {T, F}"><code>Minc2.transform_point</code></a></li><li><a href="../low_level/#Minc2.transform_point-Tuple{Minc2.TransformHandle, Vector{Float64}}"><code>Minc2.transform_point</code></a></li><li><a href="../geo/#Minc2.voxel_to_world-Tuple{Minc2.InverseGridTransform}"><code>Minc2.voxel_to_world</code></a></li><li><a href="../geo/#Minc2.voxel_to_world-Tuple{Minc2.GridTransform}"><code>Minc2.voxel_to_world</code></a></li><li><a href="../low_level/#Minc2.voxel_to_world-Tuple{Minc2.VolumeHandle, Vector{Float64}}"><code>Minc2.voxel_to_world</code></a></li><li><a href="../low_level/#Minc2.voxel_to_world-Tuple{Minc2.MincHeader}"><code>Minc2.voxel_to_world</code></a></li><li><a href="../high_level/#Minc2.voxel_to_world"><code>Minc2.voxel_to_world</code></a></li><li><a href="../low_level/#Minc2.world_to_voxel-Tuple{Minc2.VolumeHandle, Vector{Float64}}"><code>Minc2.world_to_voxel</code></a></li><li><a href="../geo/#Minc2.world_to_voxel-Tuple{Minc2.GridTransform}"><code>Minc2.world_to_voxel</code></a></li><li><a href="../low_level/#Minc2.world_to_voxel-Tuple{Minc2.MincHeader}"><code>Minc2.world_to_voxel</code></a></li><li><a href="../geo/#Minc2.world_to_voxel-Tuple{Minc2.InverseGridTransform}"><code>Minc2.world_to_voxel</code></a></li><li><a href="../high_level/#Minc2.world_to_voxel"><code>Minc2.world_to_voxel</code></a></li><li><a href="../low_level/#Minc2.write_attribute-Union{Tuple{T}, Tuple{Minc2.VolumeHandle, String, String, T}} where T"><code>Minc2.write_attribute</code></a></li><li><a href="../low_level/#Minc2.write_history-Tuple{Minc2.VolumeHandle, String}"><code>Minc2.write_history</code></a></li><li><a href="../low_level/#Minc2.write_minc_volume_raw-Union{Tuple{T}, Tuple{Minc2.VolumeHandle, Array{T, N} where N}} where T"><code>Minc2.write_minc_volume_raw</code></a></li><li><a href="../low_level/#Minc2.write_minc_volume_raw-Union{Tuple{Repr}, Tuple{Store}, Tuple{String, Type{Store}, Union{Nothing, Minc2.MincHeader}, Array{Repr, N} where N}} where {Store, Repr}"><code>Minc2.write_minc_volume_raw</code></a></li><li><a href="../low_level/#Minc2.write_minc_volume_std-Union{Tuple{T}, Tuple{Minc2.VolumeHandle, Array{T, N} where N}} where T"><code>Minc2.write_minc_volume_std</code></a></li><li><a href="../low_level/#Minc2.write_minc_volume_std-Union{Tuple{Repr}, Tuple{Store}, Tuple{String, Type{Store}, Union{Nothing, Minc2.MincHeader}, Array{Repr, N} where N}} where {Store, Repr}"><code>Minc2.write_minc_volume_std</code></a></li><li><a href="../low_level/#Minc2.@minc2_check-Tuple{Any}"><code>Minc2.@minc2_check</code></a></li></ul></article><nav class="docs-footer"><a class="docs-footer-prevpage" href="../low_level/">« Low level functions</a><div class="flexbox-break"></div><p class="footer-message">Powered 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