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Tell vg index to make snarls with trivial snarls
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src/subcommand/index_main.cpp

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@@ -86,7 +86,7 @@ void help_index(char** argv) {
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<< " -D, --dump print the contents of the db to stdout" << endl
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<< " -C, --compact compact the index into a single level (improves performance)" << endl
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<< "snarl distance index options" << endl
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<< " -s --snarl-name FILE load snarls from FILE" << endl
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<< " -s --snarl-name FILE load snarls from FILE (snarls must include trivial snarls)" << endl
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<< " -j --dist-name FILE use this file to store a snarl-based distance index" << endl
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<< " -w --max_dist N cap beyond which the maximum distance is no longer accurate. If this is not included or is 0, don't build maximum distance index" << endl;
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}

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