From 9e8114186f9739c75a4b42436cb41bd8970a6eac Mon Sep 17 00:00:00 2001 From: Adam Novak Date: Thu, 11 Jan 2024 11:56:15 -0500 Subject: [PATCH] Reference vg-data at its new home --- scripts/mcmc_Makefile | 6 +++--- vgci/vgci.py | 4 ++-- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/scripts/mcmc_Makefile b/scripts/mcmc_Makefile index bbaa6968ccc..42d60c03ada 100644 --- a/scripts/mcmc_Makefile +++ b/scripts/mcmc_Makefile @@ -85,10 +85,10 @@ clean: rm -r $(TOIL_OS) CHR21.fa: - wget https://courtyard.gi.ucsc.edu/~anovak/vg-data/bakeoff/CHR21.fa + wget https://public.gi.ucsc.edu/~anovak/vg-data/bakeoff/CHR21.fa 1kg_hg19-CHR21.vcf.gz: - wget https://courtyard.gi.ucsc.edu/~anovak/vg-data/bakeoff/1kg_hg19-CHR21.vcf.gz + wget https://public.gi.ucsc.edu/~anovak/vg-data/bakeoff/1kg_hg19-CHR21.vcf.gz 1kg_hg19-CHR21.vcf.gz.tbi: - wget https://courtyard.gi.ucsc.edu/~anovak/vg-data/bakeoff/1kg_hg19-CHR21.vcf.gz.tbi + wget https://public.gi.ucsc.edu/~anovak/vg-data/bakeoff/1kg_hg19-CHR21.vcf.gz.tbi diff --git a/vgci/vgci.py b/vgci/vgci.py index 465117beb07..9e9480ef93f 100755 --- a/vgci/vgci.py +++ b/vgci/vgci.py @@ -54,8 +54,8 @@ def setUp(self): # when moving to a more inclusive reference? self.worse_threshold = 0.005 # /public/groups/vg/vg-data on Courtyard is served as - # https://courtyard.gi.ucsc.edu/~anovak/vg-data/ - self.vg_data = 'https://courtyard.gi.ucsc.edu/~anovak/vg-data' + # https://public.gi.ucsc.edu/~anovak/vg-data/ + self.vg_data = 'https://public.gi.ucsc.edu/~anovak/vg-data' self.input_store = self.vg_data + '/bakeoff' self.vg_docker = None self.container = None # Use default in toil-vg, which is Docker