From f8bd9031b3f6d810ecffcaad6dc0a99c062298b5 Mon Sep 17 00:00:00 2001 From: KrisDavie Date: Thu, 23 Mar 2023 15:18:18 +0100 Subject: [PATCH] apptainer update --- docs/nextflow/configs.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/nextflow/configs.md b/docs/nextflow/configs.md index e2c35b9..407a77e 100644 --- a/docs/nextflow/configs.md +++ b/docs/nextflow/configs.md @@ -82,7 +82,7 @@ Another interesting parameter to consider adding to the configuration file is th ``` **Singularity/Apptainer**: -Similar to docker, using a singularity or apptainer image does not require you to have to adapt the pipeline script. You can run with Singularity container using the following command-line parameter: `-with-singularity [singularity-image-file]` (Full Apptainer support is coming soon), where the image is downloaded from Dockerhub as well, built on runtime and then stored in a folder `singularity/`. Re-using a singularity image is possible with: +Similar to docker, using a singularity or apptainer image does not require you to have to adapt the pipeline script. You can run with Singularity container using the following command-line parameter: `-with-singularity [singularity-image-file]` (Apptainer support is also present), where the image is downloaded from Dockerhub as well, built on runtime and then stored in a folder `singularity/`. Re-using a singularity image is possible with: ``` singularity.cacheDir = "/path/to/singularity" ```