From 31baaef9656ba9c6f6d3e196b63bf28d3cad2e17 Mon Sep 17 00:00:00 2001 From: Bruno Rodrigues Date: Tue, 11 Jun 2024 23:18:34 +0000 Subject: [PATCH 01/25] Add pagination to `/GET package` endpoint --- pdm.lock | 784 ++++++++--------------------- pyproject.toml | 1 + src/mainframe/endpoints/package.py | 5 +- src/mainframe/server.py | 2 + 4 files changed, 206 insertions(+), 586 deletions(-) diff --git a/pdm.lock b/pdm.lock index adab211b..20e653e1 100644 --- a/pdm.lock +++ b/pdm.lock @@ -3,21 +3,19 @@ [metadata] groups = ["default", "docs", "lint", "logs", "test"] -strategy = [] -lock_version = "4.5.0" -content_hash = "sha256:5c01241f0e8e29caf119b829f5b212fecab597b57fa4977190df17b9fc0ef31f" - -[[metadata.targets]] -requires_python = ">=3.12,<3.13" +strategy = ["cross_platform", "inherit_metadata"] +lock_version = "4.4.2" +content_hash = "sha256:422d739ccd9902dc7ffbf11845f29004da4a9171ed6539c79ccc847c07c81773" [[package]] name = "alabaster" -version = "0.7.16" -requires_python = ">=3.9" +version = "1.0.0" +requires_python = ">=3.10" summary = "A light, configurable Sphinx theme" +groups = ["docs"] files = [ - 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If multiple packages are returned, they are ordered with the most @@ -172,7 +173,7 @@ def lookup_package_info( data = session.scalars(query).unique() packages = [Package.from_db(result) for result in data] - return packages + return paginate(packages) def _deduplicate_packages(packages: list[PackageSpecifier], session: Session) -> set[tuple[str, str]]: diff --git a/src/mainframe/server.py b/src/mainframe/server.py index e2c3d544..9afe8ba0 100644 --- a/src/mainframe/server.py +++ b/src/mainframe/server.py @@ -8,6 +8,7 @@ import sentry_sdk from asgi_correlation_id import CorrelationIdMiddleware, correlation_id from fastapi import Depends, FastAPI +from fastapi_pagination import add_pagination from letsbuilda.pypi import PyPIServices from sentry_sdk.integrations.logging import LoggingIntegration from structlog_sentry import SentryProcessor @@ -71,6 +72,7 @@ async def lifespan(app_: FastAPI): description="A service that provides a REST API for managing rules.", version=__version__, ) +add_pagination(app) if GIT_SHA in ("development", "testing"): app.dependency_overrides[validate_token] = validate_token_override From cad01c1261f8bb98e172106894bc5fdc318c5b68 Mon Sep 17 00:00:00 2001 From: Bruno Rodrigues Date: Sat, 15 Jun 2024 05:50:48 +0000 Subject: [PATCH 02/25] Add built-in pagination support for SQLAlchemy results --- src/mainframe/endpoints/package.py | 8 ++++---- src/mainframe/server.py | 3 ++- 2 files changed, 6 insertions(+), 5 deletions(-) diff --git a/src/mainframe/endpoints/package.py b/src/mainframe/endpoints/package.py index 83847a07..3d034888 100644 --- a/src/mainframe/endpoints/package.py +++ b/src/mainframe/endpoints/package.py @@ -4,7 +4,8 @@ import structlog from fastapi import APIRouter, Depends, HTTPException -from fastapi_pagination import Page, paginate +from fastapi_pagination import Page +from fastapi_pagination.ext.sqlalchemy import paginate # type: ignore from letsbuilda.pypi import Package as PyPIPackage, PyPIServices # type: ignore from letsbuilda.pypi.exceptions import PackageNotFoundError from sqlalchemy import select, tuple_ @@ -170,10 +171,9 @@ def lookup_package_info( query = query.where(Scan.finished_at >= dt.datetime.fromtimestamp(since, tz=dt.timezone.utc)) with session, session.begin(): - data = session.scalars(query).unique() - packages = [Package.from_db(result) for result in data] + log.info("Package info queried") + return paginate(session, query, transformer=lambda items: [Package.from_db(item) for item in items]) - return paginate(packages) def _deduplicate_packages(packages: list[PackageSpecifier], session: Session) -> set[tuple[str, str]]: diff --git a/src/mainframe/server.py b/src/mainframe/server.py index 9afe8ba0..bd702549 100644 --- a/src/mainframe/server.py +++ b/src/mainframe/server.py @@ -72,7 +72,6 @@ async def lifespan(app_: FastAPI): description="A service that provides a REST API for managing rules.", version=__version__, ) -add_pagination(app) if GIT_SHA in ("development", "testing"): app.dependency_overrides[validate_token] = validate_token_override @@ -102,3 +101,5 @@ async def update_rules(): for router in routers: app.include_router(router) + +add_pagination(app) From 73de75fe648c0b02cc12954bddea0c905bee7810 Mon Sep 17 00:00:00 2001 From: Bruno Rodrigues dos Santos <130629262+BruDriguezz@users.noreply.github.com> Date: Tue, 25 Jun 2024 19:48:28 +0000 Subject: [PATCH 03/25] Add params for pagination, update tests --- src/mainframe/endpoints/package.py | 9 ++++++-- tests/test_package.py | 34 +++++++++++++++--------------- 2 files changed, 24 insertions(+), 19 deletions(-) diff --git a/src/mainframe/endpoints/package.py b/src/mainframe/endpoints/package.py index 3d034888..cd0c6294 100644 --- a/src/mainframe/endpoints/package.py +++ b/src/mainframe/endpoints/package.py @@ -4,7 +4,7 @@ import structlog from fastapi import APIRouter, Depends, HTTPException -from fastapi_pagination import Page +from fastapi_pagination import Page, Params from fastapi_pagination.ext.sqlalchemy import paginate # type: ignore from letsbuilda.pypi import Package as PyPIPackage, PyPIServices # type: ignore from letsbuilda.pypi.exceptions import PackageNotFoundError @@ -118,6 +118,8 @@ def lookup_package_info( since: Optional[int] = None, name: Optional[str] = None, version: Optional[str] = None, + page: int = 1, + size: int = 50, ) -> Page[Package]: """ Lookup information on scanned packages based on name, version, or time @@ -172,7 +174,10 @@ def lookup_package_info( with session, session.begin(): log.info("Package info queried") - return paginate(session, query, transformer=lambda items: [Package.from_db(item) for item in items]) + params = Params(page=page, size=size) + return paginate( + session, query, params=params, transformer=lambda items: [Package.from_db(item) for item in items] + ) diff --git a/tests/test_package.py b/tests/test_package.py index 7a705d44..b081d7ee 100644 --- a/tests/test_package.py +++ b/tests/test_package.py @@ -37,33 +37,33 @@ @pytest.mark.parametrize( - "since,name,version", + "since,name,version, page, size", [ - (0, "a", None), - (0, None, None), - (0, "b", None), - (None, "a", "0.1.0"), + (0, "a", None, 1, 50), + (0, None, None, 1, 50), + (0, "b", None, 1, 50), + (None, "a", "0.1.0", 1, 50), ], ) def test_package_lookup( since: Optional[int], name: Optional[str], version: Optional[str], + page: int, + size: int, test_data: list[Scan], db_session: Session, ): - exp: set[tuple[str, str]] = set() - for scan in test_data: - if since is not None and (scan.finished_at is None or since > int(scan.finished_at.timestamp())): - continue - if name is not None and scan.name != name: - continue - if version is not None and scan.version != version: - continue - exp.add((scan.name, scan.version)) - - scans = lookup_package_info(db_session, since, name, version) - assert exp == {(scan.name, scan.version) for scan in scans} + expected_scans = [ + (scan.name, scan.version) + for scan in test_data + if (since is None or (scan.finished_at is not None and since <= int(scan.finished_at.timestamp()))) + and (name is None or scan.name == name) + and (version is None or scan.version == version) + ] + + actual_scans = lookup_package_info(db_session, since, name, version, page, size) + assert set(expected_scans) == {(scan.name, scan.version) for scan in actual_scans.items} @pytest.mark.parametrize( From 87c48f3710cffc53ecc9b8448af0dba53f520482 Mon Sep 17 00:00:00 2001 From: BruDriguezz Date: Tue, 6 Aug 2024 15:24:42 -0300 Subject: [PATCH 04/25] Increase page size to 100 --- src/mainframe/endpoints/package.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/mainframe/endpoints/package.py b/src/mainframe/endpoints/package.py index cd0c6294..790e68d0 100644 --- a/src/mainframe/endpoints/package.py +++ b/src/mainframe/endpoints/package.py @@ -119,7 +119,7 @@ def lookup_package_info( name: Optional[str] = None, version: Optional[str] = None, page: int = 1, - size: int = 50, + size: int = 100, ) -> Page[Package]: """ Lookup information on scanned packages based on name, version, or time From deba6942c0a5d067c06b98a8d2e643e0e6500906 Mon Sep 17 00:00:00 2001 From: Bruno Rodrigues dos Santos Date: Tue, 6 Aug 2024 18:32:12 -0300 Subject: [PATCH 05/25] Improvements, fix tests Co-authored-by: jonathan-d-zhang <69145546+jonathan-d-zhang@users.noreply.github.com> Signed-off-by: Bruno Rodrigues dos Santos --- src/mainframe/endpoints/package.py | 2 -- tests/test_package.py | 8 ++++---- 2 files changed, 4 insertions(+), 6 deletions(-) diff --git a/src/mainframe/endpoints/package.py b/src/mainframe/endpoints/package.py index 790e68d0..b6233f83 100644 --- a/src/mainframe/endpoints/package.py +++ b/src/mainframe/endpoints/package.py @@ -173,14 +173,12 @@ def lookup_package_info( query = query.where(Scan.finished_at >= dt.datetime.fromtimestamp(since, tz=dt.timezone.utc)) with session, session.begin(): - log.info("Package info queried") params = Params(page=page, size=size) return paginate( session, query, params=params, transformer=lambda items: [Package.from_db(item) for item in items] ) - def _deduplicate_packages(packages: list[PackageSpecifier], session: Session) -> set[tuple[str, str]]: name_ver = {(p.name, p.version) for p in packages} scalars = session.scalars(select(Scan).where(tuple_(Scan.name, Scan.version).in_(name_ver))) diff --git a/tests/test_package.py b/tests/test_package.py index b081d7ee..802e03a9 100644 --- a/tests/test_package.py +++ b/tests/test_package.py @@ -54,16 +54,16 @@ def test_package_lookup( test_data: list[Scan], db_session: Session, ): - expected_scans = [ + expected_scans = { (scan.name, scan.version) for scan in test_data if (since is None or (scan.finished_at is not None and since <= int(scan.finished_at.timestamp()))) and (name is None or scan.name == name) and (version is None or scan.version == version) - ] + } actual_scans = lookup_package_info(db_session, since, name, version, page, size) - assert set(expected_scans) == {(scan.name, scan.version) for scan in actual_scans.items} + assert expected_scans == {(scan.name, scan.version) for scan in actual_scans.items} @pytest.mark.parametrize( @@ -109,7 +109,7 @@ def test_package_lookup_files(db_session: Session): with db_session.begin(): db_session.add(scan) - package = lookup_package_info(db_session, name="abc", version="1.0.0")[0] + package = lookup_package_info(db_session, name="abc", version="1.0.0").items[0] assert package.distributions == distros From db4c097adbd1a8ba2b237ecdf8dc89772c477e38 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sun, 1 Sep 2024 04:09:25 +0000 Subject: [PATCH 06/25] build(deps): Bump python in the container-dependencies group Bumps the container-dependencies group with 1 update: python. Updates `python` from `740d94a` to `59c7332` --- updated-dependencies: - dependency-name: python dependency-type: direct:production dependency-group: container-dependencies ... Signed-off-by: dependabot[bot] --- Dockerfile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Dockerfile b/Dockerfile index 90463699..aff2b23f 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM python:3.12-slim@sha256:740d94a19218c8dd584b92f804b1158f85b0d241e5215ea26ed2dcade2b9d138 as builder +FROM python:3.12-slim@sha256:59c7332a4a24373861c4a5f0eec2c92b87e3efeb8ddef011744ef9a751b1d11c as builder RUN pip install -U pip setuptools wheel RUN pip install pdm @@ -22,7 +22,7 @@ ENV GIT_SHA="testing" CMD ["pdm", "run", "coverage"] -FROM python:3.12-slim@sha256:740d94a19218c8dd584b92f804b1158f85b0d241e5215ea26ed2dcade2b9d138 as prod +FROM python:3.12-slim@sha256:59c7332a4a24373861c4a5f0eec2c92b87e3efeb8ddef011744ef9a751b1d11c as prod # Define Git SHA build argument for sentry ARG git_sha="development" From 14edb7d5a294d0a03f3da316b4889007316e3d85 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 16 Sep 2024 09:27:01 +0000 Subject: [PATCH 07/25] build(deps): Bump darbiadev/.github Bumps the ci-dependencies group with 1 update in the / directory: [darbiadev/.github](https://github.com/darbiadev/.github). Updates `darbiadev/.github` from 13.0.5 to 14.0.0 - [Release notes](https://github.com/darbiadev/.github/releases) - [Commits](https://github.com/darbiadev/.github/compare/142663fca1c211af6a7dccf3a57cac48cfc3c017...e3ebedcaeee8d40bdb7ef569dacd74829ab0c368) --- updated-dependencies: - dependency-name: darbiadev/.github dependency-type: direct:production update-type: version-update:semver-major dependency-group: ci-dependencies ... Signed-off-by: dependabot[bot] --- .github/workflows/container-build-push.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/container-build-push.yaml b/.github/workflows/container-build-push.yaml index 701717b1..8d297ac0 100644 --- a/.github/workflows/container-build-push.yaml +++ b/.github/workflows/container-build-push.yaml @@ -17,6 +17,6 @@ permissions: jobs: build-push: - uses: darbiadev/.github/.github/workflows/docker-build-push.yaml@142663fca1c211af6a7dccf3a57cac48cfc3c017 # v13.0.5 + uses: darbiadev/.github/.github/workflows/docker-build-push.yaml@e3ebedcaeee8d40bdb7ef569dacd74829ab0c368 # v14.0.0 with: file-name: Dockerfile From ba0953da2edba9479a4d56b4279495000c31ca4f Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Tue, 1 Oct 2024 00:55:19 -0500 Subject: [PATCH 08/25] Add httpx client dependency Create a dependency to get the HTTPX client. This was always there bound to state, but wrapping it in a dependency provides a cleaner interface and better testability. --- src/mainframe/dependencies.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/src/mainframe/dependencies.py b/src/mainframe/dependencies.py index 32eb5ac0..438292f4 100644 --- a/src/mainframe/dependencies.py +++ b/src/mainframe/dependencies.py @@ -18,6 +18,10 @@ def get_pypi_client() -> PyPIServices: return PyPIServices(http_client) +def get_httpx_client(request: Request) -> httpx.Client: + return request.app.state.http_session + + def get_rules(request: Request) -> Rules: return request.app.state.rules From 987c7af14dc841fd26e17af0858c0440807e3dde Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Tue, 1 Oct 2024 00:56:55 -0500 Subject: [PATCH 09/25] Modify reporter to check PyPI package page instead of JSON API This will ensure that quarantined packages don't register as "not on PyPI" because quarantined packages are not visible through the JSON API, however still show as normal when queried through pypi.org/project/. --- src/mainframe/endpoints/report.py | 18 ++++++++---------- 1 file changed, 8 insertions(+), 10 deletions(-) diff --git a/src/mainframe/endpoints/report.py b/src/mainframe/endpoints/report.py index 250a2499..22d5cbe2 100644 --- a/src/mainframe/endpoints/report.py +++ b/src/mainframe/endpoints/report.py @@ -5,13 +5,12 @@ import structlog from fastapi import APIRouter, Depends, HTTPException from fastapi.encoders import jsonable_encoder -from letsbuilda.pypi import PackageNotFoundError, PyPIServices from sqlalchemy import select from sqlalchemy.orm import Session, joinedload from mainframe.constants import mainframe_settings from mainframe.database import get_db -from mainframe.dependencies import get_pypi_client, validate_token +from mainframe.dependencies import get_httpx_client, validate_token from mainframe.json_web_token import AuthenticationData from mainframe.models.orm import Scan from mainframe.models.schemas import ( @@ -138,12 +137,11 @@ def _validate_additional_information(body: ReportPackageBody, scan: Scan): raise error -def _validate_pypi(name: str, version: str, pypi_client: PyPIServices): +def _validate_pypi(name: str, version: str, http_client: httpx.Client): log = logger.bind(package={"name": name, "version": version}) - try: - pypi_client.get_package_metadata(name, version) - except PackageNotFoundError: + response = http_client.get(f"https://pypi.org/project/{name}") + if response.status_code == 404: error = HTTPException(404, detail="Package not found on PyPI") log.error("Package not found on PyPI", tag="package_not_found_pypi") raise error @@ -160,7 +158,7 @@ def report_package( body: ReportPackageBody, session: Annotated[Session, Depends(get_db)], auth: Annotated[AuthenticationData, Depends(validate_token)], - pypi_client: Annotated[PyPIServices, Depends(get_pypi_client)], + httpx_client: Annotated[httpx.Client, Depends(get_httpx_client)], ): """ Report a package to PyPI. @@ -206,7 +204,7 @@ def report_package( # If execution reaches here, we must have found a matching scan in our # database. Check if the package we want to report exists on PyPI. - _validate_pypi(name, version, pypi_client) + _validate_pypi(name, version, httpx_client) rules_matched: list[str] = [rule.name for rule in scan.rules] @@ -220,7 +218,7 @@ def report_package( additional_information=body.additional_information, ) - httpx.post(f"{mainframe_settings.reporter_url}/report/email", json=jsonable_encoder(report)) + httpx_client.post(f"{mainframe_settings.reporter_url}/report/email", json=jsonable_encoder(report)) else: # We previously checked this condition, but the typechecker isn't smart # enough to figure that out @@ -233,7 +231,7 @@ def report_package( extra=dict(yara_rules=rules_matched), ) - httpx.post(f"{mainframe_settings.reporter_url}/report/{name}", json=jsonable_encoder(report)) + httpx_client.post(f"{mainframe_settings.reporter_url}/report/{name}", json=jsonable_encoder(report)) with session.begin(): scan.reported_by = auth.subject From b7e2d3cef0fa198633bca897fe418e36f2b6dafe Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Tue, 1 Oct 2024 00:57:51 -0500 Subject: [PATCH 10/25] Fix tests Fix tests to have them pass in mock objects as arguments rather than trying to monkeypatch the httpx module by injecting mocks --- tests/test_report.py | 24 +++++++----------------- 1 file changed, 7 insertions(+), 17 deletions(-) diff --git a/tests/test_report.py b/tests/test_report.py index 92619d89..fde95f05 100644 --- a/tests/test_report.py +++ b/tests/test_report.py @@ -7,9 +7,6 @@ import pytest from fastapi import HTTPException from fastapi.encoders import jsonable_encoder -from letsbuilda.pypi import PyPIServices -from letsbuilda.pypi.exceptions import PackageNotFoundError -from pytest import MonkeyPatch from sqlalchemy import select from sqlalchemy.orm import Session, sessionmaker @@ -79,7 +76,6 @@ def test_report( sm: sessionmaker[Session], db_session: Session, auth: AuthenticationData, - pypi_client: PyPIServices, body: ReportPackageBody, url: str, expected: EmailReport | ObservationReport, @@ -107,11 +103,11 @@ def test_report( with db_session.begin(): db_session.add(scan) - httpx.post = MagicMock() + mock_httpx_client = MagicMock() - report_package(body, sm(), auth, pypi_client) + report_package(body, sm(), auth, mock_httpx_client) - httpx.post.assert_called_once_with(url, json=jsonable_encoder(expected)) + mock_httpx_client.post.assert_called_once_with(url, json=jsonable_encoder(expected)) with sm() as sess, sess.begin(): s = sess.scalar(select(Scan).where(Scan.name == "c").where(Scan.version == "1.0.0")) @@ -121,18 +117,12 @@ def test_report( assert s.reported_at is not None -def test_report_package_not_on_pypi( - pypi_client: PyPIServices, - monkeypatch: MonkeyPatch, -): - # Make get_package_metadata always throw PackageNotFoundError to simulate an invalid package - def _side_effect(name: str, version: str): - raise PackageNotFoundError(name, version) - - monkeypatch.setattr(pypi_client, "get_package_metadata", _side_effect) +def test_report_package_not_on_pypi(): + mock_httpx_client = MagicMock(spec=httpx.Client) + mock_httpx_client.configure_mock(**{"get.return_value.status_code": 404}) with pytest.raises(HTTPException) as e: - _validate_pypi("c", "1.0.0", pypi_client) + _validate_pypi("c", "1.0.0", mock_httpx_client) assert e.value.status_code == 404 From 293b4762f6c8a6f5f264eaf7edd048896e41d2e7 Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Sat, 5 Oct 2024 20:44:26 -0500 Subject: [PATCH 11/25] Remove email recipient configuration option --- compose.yaml | 1 - 1 file changed, 1 deletion(-) diff --git a/compose.yaml b/compose.yaml index e5b6e59e..5a583707 100644 --- a/compose.yaml +++ b/compose.yaml @@ -13,7 +13,6 @@ services: MICROSOFT_TENANT_ID: tenant_id MICROSOFT_CLIENT_ID: client_id MICROSOFT_CLIENT_SECRET: client_secret - EMAIL_RECIPIENT: email_recipient DRAGONFLY_GITHUB_TOKEN: test volumes: - "./src:/app/src" From 1245574d04ae92d038236a17f74b3b1be6b2ffda Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Sat, 5 Oct 2024 20:44:59 -0500 Subject: [PATCH 12/25] Remove all email related features --- src/mainframe/endpoints/report.py | 60 ++++++++++------------------ src/mainframe/models/schemas.py | 10 ----- tests/test_report.py | 65 ++++++++----------------------- 3 files changed, 37 insertions(+), 98 deletions(-) diff --git a/src/mainframe/endpoints/report.py b/src/mainframe/endpoints/report.py index 22d5cbe2..f324aefc 100644 --- a/src/mainframe/endpoints/report.py +++ b/src/mainframe/endpoints/report.py @@ -14,7 +14,6 @@ from mainframe.json_web_token import AuthenticationData from mainframe.models.orm import Scan from mainframe.models.schemas import ( - EmailReport, Error, ObservationKind, ObservationReport, @@ -121,20 +120,17 @@ def _validate_additional_information(body: ReportPackageBody, scan: Scan): log = logger.bind(package={"name": body.name, "version": body.version}) if body.additional_information is None: - if len(scan.rules) == 0 or body.use_email is False: - if len(scan.rules) == 0: - detail = ( - f"additional_information is a required field as package " - f"`{body.name}@{body.version}` has no matched rules in the database" - ) - else: - detail = "additional_information is required when using Observation API" - - error = HTTPException(400, detail=detail) - log.error( - "Missing additional_information field", error_message=detail, tag="missing_additional_information" + if len(scan.rules) == 0: + detail = ( + f"additional_information is a required field as package " + f"`{body.name}@{body.version}` has no matched rules in the database" ) - raise error + else: + detail = "additional_information is required when using Observation API" + + error = HTTPException(400, detail=detail) + log.error("Missing additional_information field", error_message=detail, tag="missing_additional_information") + raise error def _validate_pypi(name: str, version: str, http_client: httpx.Client): @@ -163,9 +159,6 @@ def report_package( """ Report a package to PyPI. - The optional `use_email` field can be used to send reports by email. This - defaults to `False`. - There are some restrictions on what packages can be reported. They must: - exist in the database - exist on PyPI @@ -208,30 +201,18 @@ def report_package( rules_matched: list[str] = [rule.name for rule in scan.rules] - if body.use_email is True: - report = EmailReport( - name=body.name, - version=body.version, - rules_matched=rules_matched, - recipient=body.recipient, - inspector_url=inspector_url, - additional_information=body.additional_information, - ) + # We previously checked this condition, but the typechecker isn't smart + # enough to figure that out + assert body.additional_information is not None - httpx_client.post(f"{mainframe_settings.reporter_url}/report/email", json=jsonable_encoder(report)) - else: - # We previously checked this condition, but the typechecker isn't smart - # enough to figure that out - assert body.additional_information is not None - - report = ObservationReport( - kind=ObservationKind.Malware, - summary=body.additional_information, - inspector_url=inspector_url, - extra=dict(yara_rules=rules_matched), - ) + report = ObservationReport( + kind=ObservationKind.Malware, + summary=body.additional_information, + inspector_url=inspector_url, + extra=dict(yara_rules=rules_matched), + ) - httpx_client.post(f"{mainframe_settings.reporter_url}/report/{name}", json=jsonable_encoder(report)) + httpx_client.post(f"{mainframe_settings.reporter_url}/report/{name}", json=jsonable_encoder(report)) with session.begin(): scan.reported_by = auth.subject @@ -247,7 +228,6 @@ def report_package( "inspector_url": inspector_url, "additional_information": body.additional_information, "rules_matched": rules_matched, - "use_email": body.use_email, }, reported_by=auth.subject, ) diff --git a/src/mainframe/models/schemas.py b/src/mainframe/models/schemas.py index cad4d420..7804ab2c 100644 --- a/src/mainframe/models/schemas.py +++ b/src/mainframe/models/schemas.py @@ -95,16 +95,6 @@ class ReportPackageBody(PackageSpecifier): recipient: Optional[str] inspector_url: Optional[str] additional_information: Optional[str] - use_email: bool = False - - -class EmailReport(PackageSpecifier): - """Model for a report using email""" - - rules_matched: list[str] - recipient: Optional[str] = None - inspector_url: Optional[str] - additional_information: Optional[str] # Taken from diff --git a/tests/test_report.py b/tests/test_report.py index fde95f05..c1e63d0b 100644 --- a/tests/test_report.py +++ b/tests/test_report.py @@ -26,60 +26,31 @@ from mainframe.json_web_token import AuthenticationData from mainframe.models.orm import DownloadURL, Rule, Scan, Status from mainframe.models.schemas import ( - EmailReport, ObservationKind, ObservationReport, ReportPackageBody, ) -@pytest.mark.parametrize( - "body,url,expected", - [ - ( - ReportPackageBody( - name="c", - version="1.0.0", - recipient=None, - inspector_url=None, - additional_information="this package is bad", - use_email=True, - ), - "/report/email", - EmailReport( - name="c", - version="1.0.0", - rules_matched=["rule 1", "rule 2"], - inspector_url="test inspector url", - additional_information="this package is bad", - ), - ), - ( - ReportPackageBody( - name="c", - version="1.0.0", - recipient=None, - inspector_url=None, - additional_information="this package is bad", - ), - "/report/c", - ObservationReport( - kind=ObservationKind.Malware, - summary="this package is bad", - inspector_url="test inspector url", - extra=dict(yara_rules=["rule 1", "rule 2"]), - ), - ), - ], -) def test_report( sm: sessionmaker[Session], db_session: Session, auth: AuthenticationData, - body: ReportPackageBody, - url: str, - expected: EmailReport | ObservationReport, ): + body = ReportPackageBody( + name="c", + version="1.0.0", + recipient=None, + inspector_url=None, + additional_information="this package is bad", + ) + + report = ObservationReport( + kind=ObservationKind.Malware, + summary="this package is bad", + inspector_url="test inspector url", + extra=dict(yara_rules=["rule 1", "rule 2"]), + ) scan = Scan( name="c", version="1.0.0", @@ -107,7 +78,7 @@ def test_report( report_package(body, sm(), auth, mock_httpx_client) - mock_httpx_client.post.assert_called_once_with(url, json=jsonable_encoder(expected)) + mock_httpx_client.post.assert_called_once_with("/report/c", json=jsonable_encoder(report)) with sm() as sess, sess.begin(): s = sess.scalar(select(Scan).where(Scan.name == "c").where(Scan.version == "1.0.0")) @@ -180,14 +151,13 @@ def test_report_inspector_url(body_url: Optional[str], scan_url: Optional[str]): @pytest.mark.parametrize( ("body", "scan"), [ - ( # No additional information, and no rules with email + ( ReportPackageBody( name="c", version="1.0.0", recipient=None, inspector_url="inspector url override", additional_information=None, - use_email=True, ), Scan( name="c", @@ -209,14 +179,13 @@ def test_report_inspector_url(body_url: Optional[str], scan_url: Optional[str]): commit_hash="test commit hash", ), ), - ( # No additional information with Observations + ( ReportPackageBody( name="c", version="1.0.0", recipient=None, inspector_url="inspector url override", additional_information=None, - use_email=False, ), Scan( name="c", From ace0fdc39c1716c4e619a71f403ec89b6c7f5927 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sun, 6 Oct 2024 09:22:49 +0000 Subject: [PATCH 13/25] build(deps): Bump actions/checkout in the ci-dependencies group Bumps the ci-dependencies group with 1 update: [actions/checkout](https://github.com/actions/checkout). Updates `actions/checkout` from 4.1.7 to 4.2.0 - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/692973e3d937129bcbf40652eb9f2f61becf3332...d632683dd7b4114ad314bca15554477dd762a938) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-minor dependency-group: ci-dependencies ... Signed-off-by: dependabot[bot] --- .github/workflows/generate-migration-sql.yaml | 4 ++-- .github/workflows/lint-test.yaml | 2 +- .github/workflows/publish-docs.yaml | 2 +- .github/workflows/sentry-release.yaml | 2 +- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/.github/workflows/generate-migration-sql.yaml b/.github/workflows/generate-migration-sql.yaml index 1ba5012c..8b8e1b96 100644 --- a/.github/workflows/generate-migration-sql.yaml +++ b/.github/workflows/generate-migration-sql.yaml @@ -22,7 +22,7 @@ jobs: runs-on: ubuntu-24.04 steps: - name: Checkout (base) - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7 + uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 with: ref: ${{ github.event.pull_request.base.sha }} @@ -50,7 +50,7 @@ jobs: echo "BASE_MIGRATION_REVISION=${base_head}" >>"${GITHUB_ENV}" - name: Checkout (HEAD) - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7 + uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 with: clean: false ref: ${{ github.event.pull_request.head.sha }} diff --git a/.github/workflows/lint-test.yaml b/.github/workflows/lint-test.yaml index 92650a57..4e021dac 100644 --- a/.github/workflows/lint-test.yaml +++ b/.github/workflows/lint-test.yaml @@ -12,7 +12,7 @@ jobs: runs-on: ubuntu-latest steps: - name: "Checkout repository" - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7 + uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 - name: "Setup PDM" uses: pdm-project/setup-pdm@568ddd69406b30de1774ec0044b73ae06e716aa4 # v4 diff --git a/.github/workflows/publish-docs.yaml b/.github/workflows/publish-docs.yaml index 330dc5b8..c95b690e 100644 --- a/.github/workflows/publish-docs.yaml +++ b/.github/workflows/publish-docs.yaml @@ -21,7 +21,7 @@ jobs: steps: - name: "Checkout repository" - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7 + uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 - name: "Setup PDM" uses: pdm-project/setup-pdm@568ddd69406b30de1774ec0044b73ae06e716aa4 # v4 diff --git a/.github/workflows/sentry-release.yaml b/.github/workflows/sentry-release.yaml index 024199cb..efe4116b 100644 --- a/.github/workflows/sentry-release.yaml +++ b/.github/workflows/sentry-release.yaml @@ -11,7 +11,7 @@ jobs: steps: - name: "Checkout repository" - uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7 + uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 - name: "Create Sentry release" uses: getsentry/action-release@e769183448303de84c5a06aaaddf9da7be26d6c7 # v1.7.0 From 19cf51bece5a31a91673433d61420fe3328673a4 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sun, 6 Oct 2024 09:27:14 +0000 Subject: [PATCH 14/25] build(deps): Bump python in the container-dependencies group Bumps the container-dependencies group with 1 update: python. Updates `python` from `59c7332` to `ad48727` --- updated-dependencies: - dependency-name: python dependency-type: direct:production dependency-group: container-dependencies ... Signed-off-by: dependabot[bot] --- Dockerfile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Dockerfile b/Dockerfile index aff2b23f..081915a0 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -FROM python:3.12-slim@sha256:59c7332a4a24373861c4a5f0eec2c92b87e3efeb8ddef011744ef9a751b1d11c as builder +FROM python:3.12-slim@sha256:af4e85f1cac90dd3771e47292ea7c8a9830abfabbe4faa5c53f158854c2e819d as builder RUN pip install -U pip setuptools wheel RUN pip install pdm @@ -22,7 +22,7 @@ ENV GIT_SHA="testing" CMD ["pdm", "run", "coverage"] -FROM python:3.12-slim@sha256:59c7332a4a24373861c4a5f0eec2c92b87e3efeb8ddef011744ef9a751b1d11c as prod +FROM python:3.12-slim@sha256:af4e85f1cac90dd3771e47292ea7c8a9830abfabbe4faa5c53f158854c2e819d as prod # Define Git SHA build argument for sentry ARG git_sha="development" From ea7dd9075ecc6c7a265002dfde5f40a802ae3fec Mon Sep 17 00:00:00 2001 From: Siddhesh Mhadnak Date: Sun, 6 Oct 2024 15:11:29 +0530 Subject: [PATCH 15/25] ci(container-build-push): replace `darbiadev`'s workflow with `bot`'s --- .github/workflows/container-build-push.yaml | 141 +++++++++++++++++++- 1 file changed, 136 insertions(+), 5 deletions(-) diff --git a/.github/workflows/container-build-push.yaml b/.github/workflows/container-build-push.yaml index 8d297ac0..dd253e7f 100644 --- a/.github/workflows/container-build-push.yaml +++ b/.github/workflows/container-build-push.yaml @@ -1,3 +1,4 @@ +--- name: Container Build and Push on: @@ -8,15 +9,145 @@ on: - v* pull_request: +defaults: + run: + shell: bash + permissions: contents: read packages: write - # This is used to complete the identity challenge - # with sigstore/fulcio. + # This is used to complete the identity challenge with sigstore/fulcio. id-token: write +env: + # Use docker.io for Docker Hub if empty + REGISTRY: ghcr.io + # github.repository as / + IMAGE_NAME: ${{ github.repository }} + jobs: build-push: - uses: darbiadev/.github/.github/workflows/docker-build-push.yaml@e3ebedcaeee8d40bdb7ef569dacd74829ab0c368 # v14.0.0 - with: - file-name: Dockerfile + strategy: + fail-fast: false + matrix: + platform: + - linux/amd64 + + runs-on: ubuntu-24.04 + steps: + - uses: actions/checkout@d632683dd7b4114ad314bca15554477dd762a938 # v4.2.0 + + - name: Install cosign + uses: sigstore/cosign-installer@4959ce089c160fddf62f7b42464195ba1a56d382 # v3.6.0 + + - name: Set up Docker Buildx + id: buildx + uses: docker/setup-buildx-action@988b5a0280414f521da01fcc63a27aeeb4b104db # v3.6.1 + with: + platforms: ${{ matrix.platform }} + + - name: Log in to container registry (${{ env.REGISTRY }}) + uses: docker/login-action@9780b0c442fbb1117ed29e0efdff1e18412f7567 # v3.3.0 + with: + registry: ${{ env.REGISTRY }} + username: ${{ github.actor }} + password: ${{ secrets.GITHUB_TOKEN }} + + - name: Extract Docker metadata + id: docker_meta + uses: docker/metadata-action@8e5442c4ef9f78752691e2d8f8d19755c6f78e81 # v5.5.1 + with: + images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} + tags: | + type=edge + # FIXME: Remove explicit `latest` tag once we start tagging releases + type=raw,value=latest,enable={{is_default_branch}} + type=ref,event=tag + type=sha,format=long + + - name: Build and push Docker image + id: docker_build_push + uses: docker/build-push-action@4f58ea79222b3b9dc2c8bbdd6debcef730109a75 # v6.9.0 + with: + builder: ${{ steps.buildx.outputs.name }} + build-args: | + git_sha=${{ github.sha }} + cache-from: type=gha,scope=${{ matrix.platform }} + cache-to: type=gha,mode=max,scope=${{ matrix.platform }} + labels: ${{ steps.docker_meta.outputs.labels }} + platforms: ${{ matrix.platform }} + push: ${{ github.ref == 'refs/heads/main' || startswith(github.event.ref, 'refs/tags/v') }} + tags: ${{ steps.docker_meta.outputs.tags }} + + # Sign the resulting Docker image digest. + # This will only write to the public Rekor transparency log when the Docker repository is public to avoid leaking + # data. If you would like to publish transparency data even for private images, pass --force to cosign below. + # https://github.com/sigstore/cosign + - name: Sign the published Docker image + if: ${{ github.ref == 'refs/heads/main' || startswith(github.event.ref, 'refs/tags/v') }} + # This step uses the identity token to provision an ephemeral certificate against the sigstore community Fulcio + # instance. + run: cosign sign --yes ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}@${{ steps.docker_build_push.outputs.digest }} + + - name: Export digest + if: ${{ github.ref == 'refs/heads/main' || startswith(github.event.ref, 'refs/tags/v') }} + run: | + mkdir -p /tmp/digests + digest='${{ steps.docker_build_push.outputs.digest }}' + touch "/tmp/digests/${digest#sha256:}" + + - name: Upload digest + if: ${{ github.ref == 'refs/heads/main' || startswith(github.event.ref, 'refs/tags/v') }} + uses: actions/upload-artifact@50769540e7f4bd5e21e526ee35c689e35e0d6874 # v4.4.0 + with: + if-no-files-found: error + name: digests + path: /tmp/digests/* + retention-days: 1 + + merge: + if: ${{ github.ref == 'refs/heads/main' || startswith(github.event.ref, 'refs/tags/v') }} + needs: + - build-push + + runs-on: ubuntu-24.04 + steps: + - name: Download digests + uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8 + with: + name: digests + path: /tmp/digests + + - name: Set up Docker Buildx + uses: docker/setup-buildx-action@988b5a0280414f521da01fcc63a27aeeb4b104db # v3.6.1 + + - name: Log in to container registry (${{ env.REGISTRY }}) + uses: docker/login-action@9780b0c442fbb1117ed29e0efdff1e18412f7567 # v3.3.0 + with: + registry: ${{ env.REGISTRY }} + username: ${{ github.actor }} + password: ${{ secrets.GITHUB_TOKEN }} + + - name: Extract Docker metadata + id: docker_meta + uses: docker/metadata-action@8e5442c4ef9f78752691e2d8f8d19755c6f78e81 # v5.5.1 + with: + images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} + tags: | + type=edge + # FIXME: Remove explicit `latest` tag once we start tagging releases + type=raw,value=latest,enable={{is_default_branch}} + type=ref,event=tag + type=sha,format=long + + - name: Create manifest list and push + working-directory: /tmp/digests + run: > + docker buildx imagetools create \ + $(jq -cr '.tags | map("-t " + .) | join(" ")' <<< "${DOCKER_METADATA_OUTPUT_JSON}") \ + $(printf ' ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}@sha256:%s ' *) + + - name: Inspect image + run: >- + docker buildx imagetools inspect \ + '${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:${{ steps.docker_meta.outputs.version }}' From 4b402ea1002032380e8c181149943d120dd7648d Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Mon, 7 Oct 2024 16:32:33 -0500 Subject: [PATCH 16/25] Add dependencies - Add `prometheus-client>=0.21.0` - Add `prometheus-fastapi-instrumentator>=7.0.0` --- pdm.lock | 26 +++++++++++++++++++++++++- pyproject.toml | 2 ++ 2 files changed, 27 insertions(+), 1 deletion(-) diff --git a/pdm.lock b/pdm.lock index adab211b..5798976f 100644 --- a/pdm.lock +++ b/pdm.lock @@ -5,7 +5,7 @@ groups = ["default", "docs", "lint", "logs", "test"] strategy = [] lock_version = "4.5.0" -content_hash = "sha256:5c01241f0e8e29caf119b829f5b212fecab597b57fa4977190df17b9fc0ef31f" +content_hash = "sha256:096ee933cd214028204013dae12d61d1d53e72c8c21fa9fc45f109521feed42e" [[metadata.targets]] requires_python = ">=3.12,<3.13" @@ -836,6 +836,30 @@ files = [ {file = "pre_commit-3.7.1.tar.gz", hash = "sha256:8ca3ad567bc78a4972a3f1a477e94a79d4597e8140a6e0b651c5e33899c3654a"}, ] +[[package]] +name = "prometheus-client" +version = "0.21.0" +requires_python = ">=3.8" +summary = "Python client for the Prometheus monitoring system." +files = [ + {file = "prometheus_client-0.21.0-py3-none-any.whl", hash = "sha256:4fa6b4dd0ac16d58bb587c04b1caae65b8c5043e85f778f42f5f632f6af2e166"}, + {file = "prometheus_client-0.21.0.tar.gz", hash = "sha256:96c83c606b71ff2b0a433c98889d275f51ffec6c5e267de37c7a2b5c9aa9233e"}, +] + +[[package]] +name = "prometheus-fastapi-instrumentator" +version = "7.0.0" +requires_python = ">=3.8.1,<4.0.0" +summary = "Instrument your FastAPI with Prometheus metrics." +dependencies = [ + "prometheus-client<1.0.0,>=0.8.0", + "starlette<1.0.0,>=0.30.0", +] +files = [ + {file = "prometheus_fastapi_instrumentator-7.0.0-py3-none-any.whl", hash = "sha256:96030c43c776ee938a3dae58485ec24caed7e05bfc60fe067161e0d5b5757052"}, + {file = "prometheus_fastapi_instrumentator-7.0.0.tar.gz", hash = "sha256:5ba67c9212719f244ad7942d75ded80693b26331ee5dfc1e7571e4794a9ccbed"}, +] + [[package]] name = "psycopg2-binary" version = "2.9.9" diff --git a/pyproject.toml b/pyproject.toml index 2f71f965..d875dbc8 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -23,6 +23,8 @@ dependencies = [ "structlog-sentry==2.1.0", "structlog==24.4.0", "uvicorn[standard]==0.30.3", + "prometheus-client>=0.21.0", + "prometheus-fastapi-instrumentator>=7.0.0", ] dynamic = ["version"] From e1e57bbe2c113d5dd1c90f6feef8edc7762c7121 Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Mon, 7 Oct 2024 16:32:58 -0500 Subject: [PATCH 17/25] Add metrics objects --- src/mainframe/metrics.py | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 src/mainframe/metrics.py diff --git a/src/mainframe/metrics.py b/src/mainframe/metrics.py new file mode 100644 index 00000000..54ee6d84 --- /dev/null +++ b/src/mainframe/metrics.py @@ -0,0 +1,14 @@ +from prometheus_client import Counter, Gauge + + +packages_ingested = Counter("packages_ingested", "Total number of packages ingested") + +packages_in_queue = Gauge( + "packages_in_queue", + "Packages that are currently waiting to be scanned. Includes queued and pending packages.", +) + +packages_success = Counter("packages_success", "Number of packages scanned successfully") +packages_fail = Counter("packages_fail", "Number of packages that failed scanning") + +packages_reported = Counter("packages_reported", "Number of packages reported") From 8dcb3f7a634595854e73b9a0f8ebb3ad5bac13e2 Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Mon, 7 Oct 2024 16:33:24 -0500 Subject: [PATCH 18/25] Use metrics --- src/mainframe/endpoints/package.py | 13 +++++++++++++ src/mainframe/endpoints/report.py | 4 ++++ 2 files changed, 17 insertions(+) diff --git a/src/mainframe/endpoints/package.py b/src/mainframe/endpoints/package.py index 7a19a38c..a428f2c1 100644 --- a/src/mainframe/endpoints/package.py +++ b/src/mainframe/endpoints/package.py @@ -24,6 +24,8 @@ QueuePackageResponse, ) +from mainframe.metrics import packages_ingested, packages_in_queue, packages_fail, packages_success + router = APIRouter(tags=["package"]) logger: structlog.stdlib.BoundLogger = structlog.get_logger() @@ -62,6 +64,8 @@ def submit_results( log.error( f"Scan {name}@{version} already in a FINISHED state", error_message=error.detail, tag="already_finished" ) + packages_fail.inc() + packages_in_queue.dec() raise error with session, session.begin(): @@ -104,6 +108,9 @@ def submit_results( tag="scan_submitted", ) + packages_success.inc() + packages_in_queue.dec() + @router.get( "/package", @@ -226,6 +233,9 @@ def batch_queue_package( session.add(scan) + packages_ingested.inc(len(packages)) + packages_in_queue.inc(len(packages)) + @router.post( "/package", @@ -294,4 +304,7 @@ def queue_package( tag="package_added", ) + packages_ingested.inc() + packages_in_queue.inc() + return QueuePackageResponse(id=str(new_package.scan_id)) diff --git a/src/mainframe/endpoints/report.py b/src/mainframe/endpoints/report.py index 22d5cbe2..4eeed521 100644 --- a/src/mainframe/endpoints/report.py +++ b/src/mainframe/endpoints/report.py @@ -21,6 +21,8 @@ ReportPackageBody, ) +from mainframe.metrics import packages_reported + logger: structlog.stdlib.BoundLogger = structlog.get_logger() @@ -251,3 +253,5 @@ def report_package( }, reported_by=auth.subject, ) + + packages_reported.inc() From 528a597e616caf19471bb114df02e22957fa53d3 Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Mon, 7 Oct 2024 16:33:39 -0500 Subject: [PATCH 19/25] Instrument FastAPI app --- src/mainframe/server.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/src/mainframe/server.py b/src/mainframe/server.py index e2c3d544..449dd072 100644 --- a/src/mainframe/server.py +++ b/src/mainframe/server.py @@ -20,6 +20,8 @@ from mainframe.models.schemas import ServerMetadata from mainframe.rules import Rules, fetch_rules +from prometheus_fastapi_instrumentator import Instrumentator + from . import __version__ @@ -72,6 +74,8 @@ async def lifespan(app_: FastAPI): version=__version__, ) +Instrumentator().instrument(app).expose(app) + if GIT_SHA in ("development", "testing"): app.dependency_overrides[validate_token] = validate_token_override From c2493776ad94ff4e954b6b255d13595ce5a2a323 Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Wed, 9 Oct 2024 18:44:48 -0500 Subject: [PATCH 20/25] Increment metrics only for valid packages --- src/mainframe/endpoints/package.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/mainframe/endpoints/package.py b/src/mainframe/endpoints/package.py index a428f2c1..de58222b 100644 --- a/src/mainframe/endpoints/package.py +++ b/src/mainframe/endpoints/package.py @@ -233,8 +233,8 @@ def batch_queue_package( session.add(scan) - packages_ingested.inc(len(packages)) - packages_in_queue.inc(len(packages)) + packages_ingested.inc() + packages_in_queue.inc() @router.post( From 3878dd998ffd453f4aa36e6f8116e2f1677c90f4 Mon Sep 17 00:00:00 2001 From: BruDriguezz Date: Thu, 10 Oct 2024 02:01:41 -0300 Subject: [PATCH 21/25] Add backwards compability for querying all packages at once --- src/mainframe/endpoints/package.py | 20 +++++++++++--------- tests/test_package.py | 22 ++++++++++++++-------- 2 files changed, 25 insertions(+), 17 deletions(-) diff --git a/src/mainframe/endpoints/package.py b/src/mainframe/endpoints/package.py index b6233f83..ded7c415 100644 --- a/src/mainframe/endpoints/package.py +++ b/src/mainframe/endpoints/package.py @@ -1,4 +1,4 @@ -from collections.abc import Iterable +from collections.abc import Iterable, Sequence import datetime as dt from typing import Annotated, Optional @@ -118,9 +118,9 @@ def lookup_package_info( since: Optional[int] = None, name: Optional[str] = None, version: Optional[str] = None, - page: int = 1, - size: int = 100, -) -> Page[Package]: + page: Optional[int] = None, + size: Optional[int] = None, +) -> Page[Package] | Sequence[Package]: """ Lookup information on scanned packages based on name, version, or time scanned. If multiple packages are returned, they are ordered with the most @@ -173,11 +173,13 @@ def lookup_package_info( query = query.where(Scan.finished_at >= dt.datetime.fromtimestamp(since, tz=dt.timezone.utc)) with session, session.begin(): - params = Params(page=page, size=size) - return paginate( - session, query, params=params, transformer=lambda items: [Package.from_db(item) for item in items] - ) - + if page is not None and size is not None: + params = Params(page=page, size=size) + return paginate( + session, query, params=params, transformer=lambda items: [Package.from_db(item) for item in items] + ) + data = session.scalars(query).unique() + return [Package.from_db(result) for result in data] def _deduplicate_packages(packages: list[PackageSpecifier], session: Session) -> set[tuple[str, str]]: name_ver = {(p.name, p.version) for p in packages} diff --git a/tests/test_package.py b/tests/test_package.py index 802e03a9..b5a3f52a 100644 --- a/tests/test_package.py +++ b/tests/test_package.py @@ -37,33 +37,39 @@ @pytest.mark.parametrize( - "since,name,version, page, size", + "since,name,version,page,size", [ (0, "a", None, 1, 50), (0, None, None, 1, 50), (0, "b", None, 1, 50), (None, "a", "0.1.0", 1, 50), + (0, "a", None, None, None), # No pagination parameters + (None, "a", "0.1.0", None, None), # No pagination parameters ], ) def test_package_lookup( since: Optional[int], name: Optional[str], version: Optional[str], - page: int, - size: int, + page: Optional[int], + size: Optional[int], test_data: list[Scan], db_session: Session, ): expected_scans = { (scan.name, scan.version) for scan in test_data - if (since is None or (scan.finished_at is not None and since <= int(scan.finished_at.timestamp()))) - and (name is None or scan.name == name) - and (version is None or scan.version == version) + if ( + (since is None or (scan.finished_at and since <= int(scan.finished_at.timestamp()))) and + (name is None or scan.name == name) and + (version is None or scan.version == version) + ) } actual_scans = lookup_package_info(db_session, since, name, version, page, size) - assert expected_scans == {(scan.name, scan.version) for scan in actual_scans.items} + actual_scan_set = {(scan.name, scan.version) for scan in actual_scans.items} if page and size else {(scan.name, scan.version) for scan in actual_scans} + + assert expected_scans == actual_scan_set @pytest.mark.parametrize( @@ -109,7 +115,7 @@ def test_package_lookup_files(db_session: Session): with db_session.begin(): db_session.add(scan) - package = lookup_package_info(db_session, name="abc", version="1.0.0").items[0] + package = lookup_package_info(db_session, name="abc", version="1.0.0")[0] assert package.distributions == distros From 4c0a864145a82c57d8d3740dfe1a2d1570e0c9ee Mon Sep 17 00:00:00 2001 From: BruDriguezz Date: Thu, 10 Oct 2024 14:06:47 -0300 Subject: [PATCH 22/25] Lint and regenerate lockfile --- pdm.lock | 459 ++++++++++++++--------------- src/mainframe/endpoints/package.py | 3 +- tests/test_package.py | 12 +- 3 files changed, 231 insertions(+), 243 deletions(-) diff --git a/pdm.lock b/pdm.lock index 20e653e1..c96e0dd8 100644 --- a/pdm.lock +++ b/pdm.lock @@ -3,10 +3,13 @@ [metadata] groups = ["default", "docs", "lint", "logs", "test"] -strategy = ["cross_platform", "inherit_metadata"] -lock_version = "4.4.2" +strategy = ["inherit_metadata"] +lock_version = "4.5.0" content_hash = "sha256:422d739ccd9902dc7ffbf11845f29004da4a9171ed6539c79ccc847c07c81773" +[[metadata.targets]] +requires_python = ">=3.12,<3.13" + [[package]] name = "alabaster" version = "1.0.0" @@ -27,6 +30,8 @@ groups = ["default"] dependencies = [ "Mako", "SQLAlchemy>=1.3.0", + "importlib-metadata; python_version < \"3.9\"", + "importlib-resources; python_version < \"3.9\"", "typing-extensions>=4", ] files = [ @@ -40,6 +45,9 @@ version = "0.7.0" requires_python = ">=3.8" summary = "Reusable constraint types to use with typing.Annotated" groups = ["default"] +dependencies = [ + "typing-extensions>=4.0.0; python_version < \"3.9\"", +] files = [ {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, @@ -47,17 +55,19 @@ files = [ [[package]] name = "anyio" -version = "4.4.0" -requires_python = ">=3.8" +version = "4.6.0" +requires_python = ">=3.9" summary = "High level compatibility layer for multiple asynchronous event loop implementations" groups = ["default"] dependencies = [ + "exceptiongroup>=1.0.2; python_version < \"3.11\"", "idna>=2.8", "sniffio>=1.1", + "typing-extensions>=4.1; python_version < \"3.11\"", ] files = [ - 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(since is None or (scan.finished_at and since <= int(scan.finished_at.timestamp()))) and - (name is None or scan.name == name) and - (version is None or scan.version == version) + (since is None or (scan.finished_at and since <= int(scan.finished_at.timestamp()))) + and (name is None or scan.name == name) + and (version is None or scan.version == version) ) } actual_scans = lookup_package_info(db_session, since, name, version, page, size) - actual_scan_set = {(scan.name, scan.version) for scan in actual_scans.items} if page and size else {(scan.name, scan.version) for scan in actual_scans} + actual_scan_set = ( + {(scan.name, scan.version) for scan in actual_scans.items} + if page and size + else {(scan.name, scan.version) for scan in actual_scans} + ) assert expected_scans == actual_scan_set From 934d886c3899ad10e4f85b6167a69e90ca397ea9 Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Fri, 11 Oct 2024 00:27:13 -0500 Subject: [PATCH 23/25] Fix typing errors Pyright can't infer that lookup_package_info returns a Page if `page` and `size` are passed in, and returns a Sequence otherwise. Using an isinstance check instead of checking `page` and `size` gets us partway, however the generic type information for Page[T] is lost within this type guard, so we must still ignore type checking a bit to prevent "varaiable is of unknown type" errors. --- tests/test_package.py | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/tests/test_package.py b/tests/test_package.py index ba18a3dc..76e83880 100644 --- a/tests/test_package.py +++ b/tests/test_package.py @@ -1,6 +1,7 @@ from typing import Optional import datetime +from fastapi_pagination import Page import pytest from fastapi import HTTPException from letsbuilda.pypi import PyPIServices @@ -59,9 +60,10 @@ def test_package_lookup( } actual_scans = lookup_package_info(db_session, since, name, version, page, size) - actual_scan_set = ( - {(scan.name, scan.version) for scan in actual_scans.items} - if page and size + + actual_scan_set: set[tuple[str, str | None]] = ( + {(scan.name, scan.version) for scan in actual_scans.items} # type: ignore + if isinstance(actual_scans, Page) else {(scan.name, scan.version) for scan in actual_scans} ) From a0496bfa88e0a95eed1e3daad968257d3604bd13 Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Sun, 13 Oct 2024 02:36:57 -0500 Subject: [PATCH 24/25] Remove recipient field from report schema --- src/mainframe/models/schemas.py | 1 - tests/test_report.py | 3 --- 2 files changed, 4 deletions(-) diff --git a/src/mainframe/models/schemas.py b/src/mainframe/models/schemas.py index 7804ab2c..45d2ee68 100644 --- a/src/mainframe/models/schemas.py +++ b/src/mainframe/models/schemas.py @@ -92,7 +92,6 @@ class PackageSpecifier(BaseModel): class ReportPackageBody(PackageSpecifier): - recipient: Optional[str] inspector_url: Optional[str] additional_information: Optional[str] diff --git a/tests/test_report.py b/tests/test_report.py index c1e63d0b..daa964fc 100644 --- a/tests/test_report.py +++ b/tests/test_report.py @@ -40,7 +40,6 @@ def test_report( body = ReportPackageBody( name="c", version="1.0.0", - recipient=None, inspector_url=None, additional_information="this package is bad", ) @@ -155,7 +154,6 @@ def test_report_inspector_url(body_url: Optional[str], scan_url: Optional[str]): ReportPackageBody( name="c", version="1.0.0", - recipient=None, inspector_url="inspector url override", additional_information=None, ), @@ -183,7 +181,6 @@ def test_report_inspector_url(body_url: Optional[str], scan_url: Optional[str]): ReportPackageBody( name="c", version="1.0.0", - recipient=None, inspector_url="inspector url override", additional_information=None, ), From c6d9417f245cefe8b77982d5f177bc89097ac7f6 Mon Sep 17 00:00:00 2001 From: Robin5605 Date: Wed, 30 Oct 2024 16:00:39 -0500 Subject: [PATCH 25/25] Make additional_information required Additional information is required when using the Observation API. The tests that used to validate the presence for additional information when we used email have been removed. Docstrings have also been updated. --- src/mainframe/endpoints/report.py | 56 +++---------------------- src/mainframe/models/schemas.py | 2 +- tests/test_report.py | 68 ------------------------------- 3 files changed, 6 insertions(+), 120 deletions(-) diff --git a/src/mainframe/endpoints/report.py b/src/mainframe/endpoints/report.py index 969039df..1a0e2e53 100644 --- a/src/mainframe/endpoints/report.py +++ b/src/mainframe/endpoints/report.py @@ -108,33 +108,6 @@ def _validate_inspector_url(name: str, version: str, body_url: Optional[str], sc return inspector_url -def _validate_additional_information(body: ReportPackageBody, scan: Scan): - """ - Validates the additional_information field. - - Returns: - None if `body.additional_information` is valid. - - Raises: - HTTPException: 400 Bad Request if `additional_information` was required - and was not passed - """ - log = logger.bind(package={"name": body.name, "version": body.version}) - - if body.additional_information is None: - if len(scan.rules) == 0: - detail = ( - f"additional_information is a required field as package " - f"`{body.name}@{body.version}` has no matched rules in the database" - ) - else: - detail = "additional_information is required when using Observation API" - - error = HTTPException(400, detail=detail) - log.error("Missing additional_information field", error_message=detail, tag="missing_additional_information") - raise error - - def _validate_pypi(name: str, version: str, http_client: httpx.Client): log = logger.bind(package={"name": name, "version": version}) @@ -166,25 +139,11 @@ def report_package( - exist on PyPI - not already be reported - While the `inspector_url` and `additional_information` fields are optional - in the schema, the API requires you to provide them in certain cases. Some - of those are outlined below. - - `inspector_url` and `additional_information` both must be provided if the - package being reported is in a `QUEUED` or `PENDING` state. That is, the - package has not yet been scanned and therefore has no records for - `inspector_url` or any matched rules - - If the package has successfully been scanned (that is, it is in - a `FINISHED` state), and it has been determined to be malicious, then - neither `inspector_url` nor `additional_information` is required. If the - `inspector_url` is omitted, then it will default to a URL that points to - the file with the highest total score. - - If the package has successfully been scanned (that is, it is in - a `FINISHED` state), and it has been determined NOT to be malicious (that - is, it has no matched rules), then you must provide `inspector_url` AND - `additional_information`. + `inspector_url` argument is required if the package has no matched rules. + If `inspector_url` argument is not provided for a package with matched rules, + the Inspector URL of the file with the highest total score will be used. + If `inspector_url` argument is provided for a package with matched rules, + the given Inspector URL will override the default one. """ name = body.name @@ -195,7 +154,6 @@ def report_package( # Check our database first to avoid unnecessarily using PyPI API. scan = _lookup_package(name, version, session) inspector_url = _validate_inspector_url(name, version, body.inspector_url, scan.inspector_url) - _validate_additional_information(body, scan) # If execution reaches here, we must have found a matching scan in our # database. Check if the package we want to report exists on PyPI. @@ -203,10 +161,6 @@ def report_package( rules_matched: list[str] = [rule.name for rule in scan.rules] - # We previously checked this condition, but the typechecker isn't smart - # enough to figure that out - assert body.additional_information is not None - report = ObservationReport( kind=ObservationKind.Malware, summary=body.additional_information, diff --git a/src/mainframe/models/schemas.py b/src/mainframe/models/schemas.py index 45d2ee68..d09e06f4 100644 --- a/src/mainframe/models/schemas.py +++ b/src/mainframe/models/schemas.py @@ -93,7 +93,7 @@ class PackageSpecifier(BaseModel): class ReportPackageBody(PackageSpecifier): inspector_url: Optional[str] - additional_information: Optional[str] + additional_information: str # Taken from diff --git a/tests/test_report.py b/tests/test_report.py index daa964fc..c163ec88 100644 --- a/tests/test_report.py +++ b/tests/test_report.py @@ -13,9 +13,6 @@ from mainframe.endpoints.report import ( _lookup_package, # pyright: ignore [reportPrivateUsage] ) -from mainframe.endpoints.report import ( - _validate_additional_information, # pyright: ignore [reportPrivateUsage] -) from mainframe.endpoints.report import ( _validate_inspector_url, # pyright: ignore [reportPrivateUsage] ) @@ -147,71 +144,6 @@ def test_report_inspector_url(body_url: Optional[str], scan_url: Optional[str]): assert "test url" == _validate_inspector_url("a", "1.0.0", body_url, scan_url) -@pytest.mark.parametrize( - ("body", "scan"), - [ - ( - ReportPackageBody( - name="c", - version="1.0.0", - inspector_url="inspector url override", - additional_information=None, - ), - Scan( - name="c", - version="1.0.0", - status=Status.FINISHED, - score=0, - inspector_url=None, - rules=[], - download_urls=[], - queued_at=datetime.now() - timedelta(seconds=60), - queued_by="remmy", - pending_at=datetime.now() - timedelta(seconds=30), - pending_by="remmy", - finished_at=datetime.now() - timedelta(seconds=10), - finished_by="remmy", - reported_at=None, - reported_by=None, - fail_reason=None, - commit_hash="test commit hash", - ), - ), - ( - ReportPackageBody( - name="c", - version="1.0.0", - inspector_url="inspector url override", - additional_information=None, - ), - Scan( - name="c", - version="1.0.0", - status=Status.FINISHED, - score=0, - inspector_url=None, - rules=[Rule(name="ayo")], - download_urls=[], - queued_at=datetime.now() - timedelta(seconds=60), - queued_by="remmy", - pending_at=datetime.now() - timedelta(seconds=30), - pending_by="remmy", - finished_at=datetime.now() - timedelta(seconds=10), - finished_by="remmy", - reported_at=None, - reported_by=None, - fail_reason=None, - commit_hash="test commit hash", - ), - ), - ], -) -def test_report_missing_additional_information(body: ReportPackageBody, scan: Scan): - with pytest.raises(HTTPException) as e: - _validate_additional_information(body, scan) - assert e.value.status_code == 400 - - @pytest.mark.parametrize( ("scans", "name", "version", "expected_status_code"), [