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Merge branch 'release/0.11.0'
First PyOpenSci approved version.
2 parents 77dfe38 + 1440175 commit a951c7e

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‎.all-contributorsrc

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{
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"projectName": "rdata",
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"projectOwner": "VNMabus",
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"repoType": "github",
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"repoHost": "https://github.com",
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"files": [
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"CONTRIBUTORS.md"
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],
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"imageSize": 100,
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"commit": false,
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"commitConvention": "none",
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"contributors": [
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{
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"login": "vnmabus",
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"name": "Carlos Ramos Carreño",
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"avatar_url": "https://avatars.githubusercontent.com/u/2364173?v=4",
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"profile": "https://github.com/vnmabus",
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"contributions": [
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"code",
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"data",
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"doc",
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"example",
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"ideas",
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"infra",
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"maintenance",
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"projectManagement",
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"question",
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"review",
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"test",
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"tutorial"
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]
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},
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{
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"login": "",
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"name": "CSC - IT Center for Science Ltd",
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"avatar_url": "https://avatars.githubusercontent.com/u/5947494?v=4",
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"profile": "https://www.csc.fi",
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"contributions": [
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{
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"type": "code",
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"url": "https://github.com/vnmabus/rdata/commits?author=trossi"
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}
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]
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},
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{
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"login": "trossi",
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"name": "Tuomas Rossi",
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"avatar_url": "https://avatars.githubusercontent.com/u/34502776?v=4",
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"profile": "https://github.com/trossi",
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"contributions": [
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"code",
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"ideas",
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"bug"
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]
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},
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{
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"login": "VolodyaCO",
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"name": "Vladimir Vargas-Calderón",
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"avatar_url": "https://avatars.githubusercontent.com/u/31494271?v=4",
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"profile": "https://www.researchgate.net/profile/Vladimir_Vargas-Calderon",
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"contributions": [
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"bug"
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]
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},
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{
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"login": "Jorgelindo238",
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"name": "Jorgelindo",
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"avatar_url": "https://avatars.githubusercontent.com/u/79350063?v=4",
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"profile": "https://jorgelindodaveiga.myportfolio.com/",
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"contributions": [
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"bug"
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]
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},
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{
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"login": "zoj613",
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"name": "zoj613",
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"avatar_url": "https://avatars.githubusercontent.com/u/44142765?v=4",
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"profile": "https://github.com/zoj613",
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"contributions": [
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"bug"
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]
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},
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{
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"login": "schlegelp",
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"name": "Philipp Schlegel",
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"avatar_url": "https://avatars.githubusercontent.com/u/7161148?v=4",
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"profile": "https://github.com/schlegelp",
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"contributions": [
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"bug"
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]
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},
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{
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"login": "deeenes",
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"name": "deeenes",
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"avatar_url": "https://avatars.githubusercontent.com/u/2679889?v=4",
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"profile": "https://denes.omnipathdb.org/",
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"contributions": [
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"bug"
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]
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},
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{
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"login": "soheila-sahami",
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"name": "Soheila",
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"avatar_url": "https://avatars.githubusercontent.com/u/9429831?v=4",
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"profile": "https://github.com/soheila-sahami",
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"contributions": [
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"ideas"
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]
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},
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{
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"login": "userLUX",
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"name": "userLUX",
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"avatar_url": "https://avatars.githubusercontent.com/u/107994632?v=4",
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"profile": "https://github.com/userLUX",
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"contributions": [
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"bug"
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]
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}
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],
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"contributorsPerLine": 7,
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"linkToUsage": true
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}

‎.gitattributes

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# Mark rda and rds files as binary.
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# Otherwise git might change the line endings of
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# ascii-formatted files, which breaks the tests
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*.rda -text
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*.rds -text

‎.github/ISSUE_TEMPLATE/bug_report.yml

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name: Bug report
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description: Create a report to help us reproduce and fix a bug
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labels: [bug]
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body:
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- type: markdown
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attributes:
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value: >
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#### Please check that the bug has not been previously notified before submitting, by searching through the [issues list](https://github.com/vnmabus/rdata/issues).
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- type: textarea
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attributes:
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label: Bug description summary
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description: >
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Please describe the bug in a brief paragraph(s). Be clear and concise.
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validations:
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required: true
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- type: textarea
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attributes:
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label: Code to reproduce the bug
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description: |
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Please add a minimal code example that can reproduce the error. If the bug does not require more code than loading a data file you can leave this empty. This will be automatically converted to a Python block.
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placeholder: |
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import rdata
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parsed = rdata.parser.parse_file("data.rda")
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converted = rdata.conversion.convert(parsed)
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converted
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render: Python
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- type: textarea
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attributes:
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label: Data file(s)
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description: >
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If the bug was caused by loading a particular data file, please attach it or paste a link to it here.
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- type: textarea
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attributes:
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label: Expected result
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description: >
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Paste or describe the result that you expected here.
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validations:
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required: true
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- type: textarea
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attributes:
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label: Actual result
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description: >
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Paste or describe the result that you obtained here. If the code raises an error, you can past it in the next field.
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validations:
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required: true
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- type: textarea
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attributes:
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label: Traceback (if an exception is raised)
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description: |
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If an exception is raised, copy and paste the traceback here.
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placeholder: |
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FileNotFoundError Traceback (most recent call last)
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Cell In[5], line 3
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1 import rdata
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----> 3 parsed = rdata.parser.parse_file("data.rda")
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4 converted = rdata.conversion.convert(parsed)
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5 converted
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File .../rdata/parser/_parser.py:1139, in parse_file(file_or_path, expand_altrep, altrep_constructor_dict, extension)
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1137 if extension is None:
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1138 extension = getattr(path, "suffix", None)
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-> 1139 data = path.read_bytes()
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1141 return parse_data(
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1142 data,
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1143 expand_altrep=expand_altrep,
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1144 altrep_constructor_dict=altrep_constructor_dict,
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1145 extension=extension,
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1146 )
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File .../pathlib.py:1050, in Path.read_bytes(self)
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1046 def read_bytes(self):
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1047 """
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1048 Open the file in bytes mode, read it, and close the file.
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1049 """
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-> 1050 with self.open(mode='rb') as f:
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1051 return f.read()
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File .../pathlib.py:1044, in Path.open(self, mode, buffering, encoding, errors, newline)
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1042 if "b" not in mode:
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1043 encoding = io.text_encoding(encoding)
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-> 1044 return io.open(self, mode, buffering, encoding, errors, newline)
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FileNotFoundError: [Errno 2] No such file or directory: 'data.rda'
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render: Python
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- type: textarea
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attributes:
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label: Software versions
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description: >
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Include the version of the library used (obtained with `rdata.__version__`). If relevant, you can include here the OS version and versions of related software.
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placeholder: |
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rdata version: 0.10.0
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OS: Windows 10
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validations:
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required: true
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- type: textarea
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attributes:
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label: Additional context
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description: >
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Add any other context about the problem here.

‎.github/ISSUE_TEMPLATE/feature_request.yml

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name: Feature request
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description: Suggest an idea for this project
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labels: [enhancement]
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body:
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- type: markdown
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attributes:
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value: >
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#### Please check that this idea has not been proposed previously, by searching through the [issues list](https://github.com/vnmabus/rdata/issues).
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- type: textarea
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attributes:
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label: Motivation
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description: >
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A clear and concise description of what the problem is. Ex. I am always frustrated when [...]
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validations:
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required: true
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- type: textarea
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attributes:
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label: Desired functionality
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description: >
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A clear and concise description of what you want to happen.
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validations:
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required: true
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- type: textarea
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attributes:
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label: Alternatives
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description: >
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A clear and concise description of any alternative solutions or features you have considered.
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validations:
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required: false
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- type: textarea
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attributes:
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label: Additional context
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description: >
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Add any other context about the problem here.

‎.github/PULL_REQUEST_TEMPLATE.md

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<!--
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Thanks for your contribution! Please ensure you have taken a look at
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the contribution guidelines:
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https://github.com/vnmabus/rdata/blob/develop/CONTRIBUTING.md
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-->
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## References to issues or other PRs
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<!--
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Include links to the relevant issues and PRs, using the relevant Github
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keywords (e.g., Fixes) for closing automatically the issues resolved
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on merge (see https://docs.github.com/en/issues/tracking-your-work-with-issues/linking-a-pull-request-to-an-issue).
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If there is no current issue discussing the addition of this functionality, it
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is recommended to create one and discuss the feature there.
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Otherwise, it is possible for this functionality to be rejected, or to require
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considerable changes.
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Example: Fixes #42. See also #123.
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-->
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## Describe the proposed changes
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## Additional information
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## Checklist before requesting a review
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- [ ] I have performed a self-review of my code
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- [ ] The code conforms to the style used in this package (checked with [Ruff](https://docs.astral.sh/ruff/))
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- [ ] The code is fully documented and typed (type-checked with [Mypy](https://mypy-lang.org/))
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- [ ] I have added thorough tests for the new/changed functionality

‎.github/workflows/main.yml

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strategy:
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matrix:
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os: [ubuntu-latest, macos-latest, windows-latest]
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python-version: ['3.9', '3.10', '3.11']
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python-version: ['3.9', '3.10', '3.11', '3.12']
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v4
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- name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }}
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uses: actions/setup-python@v2
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uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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‎.github/workflows/mypy.yml

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name: Mypy
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on:
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pull_request:
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jobs:
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build:
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runs-on: ubuntu-latest
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name: Mypy
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steps:
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- uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v5
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with:
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python-version: "3.11"
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- name: Install dependencies
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run: |
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pip3 install ".[test,typing]" mypy;
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rm -rf build;
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- uses: tsuyoshicho/action-mypy@v4
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with:
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github_token: ${{ secrets.github_token }}
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reporter: github-pr-review
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install_types: false
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# The action will output fail if there are mypy errors
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level: error
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filter_mode: nofilter

‎.github/workflows/python-publish.yml

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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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- uses: actions/checkout@v4
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- name: Set up Python
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uses: actions/setup-python@v3
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uses: actions/setup-python@v5
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with:
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python-version: '3.x'
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- name: Install dependencies

‎.github/workflows/ruff.yml

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name: Ruff
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on: [push]
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jobs:
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ruff:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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- uses: chartboost/ruff-action@v1
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with:
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args: check --output-format github

‎.gitignore

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# mypy
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.mypy_cache/
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# ruff
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/.ruff_cache/

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