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T008: Cannot download PDB structure via MMTF API anymore #420

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seymasoyler opened this issue Aug 5, 2024 · 2 comments
Closed

T008: Cannot download PDB structure via MMTF API anymore #420

seymasoyler opened this issue Aug 5, 2024 · 2 comments

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@seymasoyler
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seymasoyler commented Aug 5, 2024

Hello,
Received url error when writing code to download PDB data. All the codes that needed to be written before were written and all the codes worked. I would appreciate it if you could help me on how to fix the error.

#Download PDB structures
structures=[Structure.from_pdbid(pdb_id) for pdb_id in pairs]
structures

Error

Screenshot from 2024-08-06 11-52-20

@seymasoyler seymasoyler changed the title T008 · Protein data acquisition: Protein Data Bank (PDB) T008 · Protein data acquisition: Protein Data Bank (PDB) / Error Aug 5, 2024
@seymasoyler seymasoyler changed the title T008 · Protein data acquisition: Protein Data Bank (PDB) / Error Problem / T008 · Protein data acquisition: Protein Data Bank (PDB) Aug 5, 2024
@dominiquesydow
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Hi @seymasoyler,

Many thanks, the webservice used behind the scenes to download the PDB structure is not in service anymore. See more details #419.

We will close this issue here as a duplicate of #419 and add updates there instead. Thanks!

@dominiquesydow dominiquesydow changed the title Problem / T008 · Protein data acquisition: Protein Data Bank (PDB) T008: Cannot download PDB structure via MMTF API anymore Aug 6, 2024
@seymasoyler
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Hi @dominiquesydow,

Thanks a lot for your feedback and help.

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