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43 | 43 | "execution_count": 1,
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44 | 44 | "metadata": {
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45 | 45 | "execution": {
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46 |
| - "iopub.execute_input": "2024-05-01T02:05:19.151904Z", |
47 |
| - "iopub.status.busy": "2024-05-01T02:05:19.151455Z", |
48 |
| - "iopub.status.idle": "2024-05-01T02:05:19.279836Z", |
49 |
| - "shell.execute_reply": "2024-05-01T02:05:19.279272Z" |
| 46 | + "iopub.execute_input": "2024-05-01T12:42:51.389016Z", |
| 47 | + "iopub.status.busy": "2024-05-01T12:42:51.388824Z", |
| 48 | + "iopub.status.idle": "2024-05-01T12:42:51.516325Z", |
| 49 | + "shell.execute_reply": "2024-05-01T12:42:51.515794Z" |
50 | 50 | }
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51 | 51 | },
|
52 | 52 | "outputs": [
|
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60 | 60 | "\r\n",
|
61 | 61 | "please submit bugs to https://github.com/votca/votca/issues\r\n",
|
62 | 62 | "\r\n",
|
63 |
| - "xtp_tools, version 2024-dev gitid: f9ac5e0 (compiled May 1 2024, 02:03:16)\r\n", |
| 63 | + "xtp_tools, version 2024-dev gitid: 62f254a (compiled May 1 2024, 12:40:44)\r\n", |
64 | 64 | "\r\n",
|
65 | 65 | "Runs excitation/charge transport tools\r\n",
|
66 | 66 | "\r\n",
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110 | 110 | "execution_count": 2,
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111 | 111 | "metadata": {
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112 | 112 | "execution": {
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113 |
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114 |
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115 |
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116 |
| - "shell.execute_reply": "2024-05-01T02:05:24.535909Z" |
| 113 | + "iopub.execute_input": "2024-05-01T12:42:51.519253Z", |
| 114 | + "iopub.status.busy": "2024-05-01T12:42:51.518863Z", |
| 115 | + "iopub.status.idle": "2024-05-01T12:42:56.616719Z", |
| 116 | + "shell.execute_reply": "2024-05-01T12:42:56.616011Z" |
117 | 117 | }
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118 | 118 | },
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119 | 119 | "outputs": [],
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141 | 141 | "execution_count": 3,
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142 | 142 | "metadata": {
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143 | 143 | "execution": {
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144 |
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145 |
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146 |
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147 |
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| 144 | + "iopub.execute_input": "2024-05-01T12:42:56.620098Z", |
| 145 | + "iopub.status.busy": "2024-05-01T12:42:56.619706Z", |
| 146 | + "iopub.status.idle": "2024-05-01T12:42:56.853702Z", |
| 147 | + "shell.execute_reply": "2024-05-01T12:42:56.853215Z" |
148 | 148 | }
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149 | 149 | },
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150 | 150 | "outputs": [
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174 | 174 | "execution_count": 4,
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175 | 175 | "metadata": {
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176 | 176 | "execution": {
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177 |
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178 |
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179 |
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180 |
| - "shell.execute_reply": "2024-05-01T02:05:24.891000Z" |
| 177 | + "iopub.execute_input": "2024-05-01T12:42:56.856310Z", |
| 178 | + "iopub.status.busy": "2024-05-01T12:42:56.856102Z", |
| 179 | + "iopub.status.idle": "2024-05-01T12:42:56.966368Z", |
| 180 | + "shell.execute_reply": "2024-05-01T12:42:56.965880Z" |
181 | 181 | }
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182 | 182 | },
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183 | 183 | "outputs": [
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221 | 221 | "execution_count": 5,
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222 | 222 | "metadata": {
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223 | 223 | "execution": {
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224 |
| - "iopub.execute_input": "2024-05-01T02:05:24.895220Z", |
225 |
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226 |
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227 |
| - "shell.execute_reply": "2024-05-01T02:05:25.005600Z" |
| 224 | + "iopub.execute_input": "2024-05-01T12:42:56.969149Z", |
| 225 | + "iopub.status.busy": "2024-05-01T12:42:56.968788Z", |
| 226 | + "iopub.status.idle": "2024-05-01T12:42:57.078554Z", |
| 227 | + "shell.execute_reply": "2024-05-01T12:42:57.077996Z" |
228 | 228 | }
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229 | 229 | },
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230 | 230 | "outputs": [
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253 | 253 | "execution_count": 6,
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254 | 254 | "metadata": {
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255 | 255 | "execution": {
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256 |
| - "iopub.execute_input": "2024-05-01T02:05:25.009223Z", |
257 |
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258 |
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259 |
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| 256 | + "iopub.execute_input": "2024-05-01T12:42:57.081185Z", |
| 257 | + "iopub.status.busy": "2024-05-01T12:42:57.080813Z", |
| 258 | + "iopub.status.idle": "2024-05-01T12:43:01.626843Z", |
| 259 | + "shell.execute_reply": "2024-05-01T12:43:01.626232Z" |
260 | 260 | }
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261 | 261 | },
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262 | 262 | "outputs": [],
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284 | 284 | "execution_count": 7,
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285 | 285 | "metadata": {
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286 | 286 | "execution": {
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287 |
| - "iopub.execute_input": "2024-05-01T02:05:29.564510Z", |
288 |
| - "iopub.status.busy": "2024-05-01T02:05:29.564288Z", |
289 |
| - "iopub.status.idle": "2024-05-01T02:05:32.142621Z", |
290 |
| - "shell.execute_reply": "2024-05-01T02:05:32.141958Z" |
| 287 | + "iopub.execute_input": "2024-05-01T12:43:01.630035Z", |
| 288 | + "iopub.status.busy": "2024-05-01T12:43:01.629805Z", |
| 289 | + "iopub.status.idle": "2024-05-01T12:43:04.203394Z", |
| 290 | + "shell.execute_reply": "2024-05-01T12:43:04.202777Z" |
291 | 291 | }
|
292 | 292 | },
|
293 | 293 | "outputs": [
|
|
301 | 301 | "\r\n",
|
302 | 302 | "please submit bugs to https://github.com/votca/votca/issues\r\n",
|
303 | 303 | "\r\n",
|
304 |
| - "xtp_tools, version 2024-dev gitid: f9ac5e0 (compiled May 1 2024, 02:03:16)\r\n", |
| 304 | + "xtp_tools, version 2024-dev gitid: 62f254a (compiled May 1 2024, 12:40:44)\r\n", |
305 | 305 | "\r\n",
|
306 | 306 | "Initializing tool\r\n",
|
307 | 307 | "... partialcharges Evaluating tool\r\n",
|
308 | 308 | "... partialcharges Using 1 threads\r\n",
|
309 | 309 | "... ... Loading QM data from methane.orb\r\n",
|
310 | 310 | "... ... ===== Running on 1 threads ===== \r\n",
|
311 |
| - "... ... 2024-5-1 2:5:29 Calculated Densities at Numerical Grid, Number of electrons is -2.37461e-08\r\n", |
312 |
| - "... ... 2024-5-1 2:5:29 Calculating ESP at CHELPG grid points\r\n", |
313 |
| - "... ... 2024-5-1 2:5:32 Netcharge constrained to 0\r\n", |
314 |
| - "... ... Sum of fitted charges: 2.42063e-14\r\n", |
| 311 | + "... ... 2024-5-1 12:43:1 Calculated Densities at Numerical Grid, Number of electrons is -2.37461e-08\r\n", |
| 312 | + "... ... 2024-5-1 12:43:1 Calculating ESP at CHELPG grid points\r\n", |
| 313 | + "... ... 2024-5-1 12:43:4 Netcharge constrained to 0\r\n", |
| 314 | + "... ... Sum of fitted charges: 2.41751e-14\r\n", |
315 | 315 | "... ... RMSE of fit: 0.00221585\r\n",
|
316 | 316 | "... ... RRMSE of fit: 0.107179\r\n",
|
317 | 317 | "... ... El Dipole from fitted charges [e*bohr]:\r\n",
|
|
339 | 339 | "execution_count": 8,
|
340 | 340 | "metadata": {
|
341 | 341 | "execution": {
|
342 |
| - "iopub.execute_input": "2024-05-01T02:05:32.145536Z", |
343 |
| - "iopub.status.busy": "2024-05-01T02:05:32.145326Z", |
344 |
| - "iopub.status.idle": "2024-05-01T02:05:32.281631Z", |
345 |
| - "shell.execute_reply": "2024-05-01T02:05:32.281080Z" |
| 342 | + "iopub.execute_input": "2024-05-01T12:43:04.206230Z", |
| 343 | + "iopub.status.busy": "2024-05-01T12:43:04.206031Z", |
| 344 | + "iopub.status.idle": "2024-05-01T12:43:04.341224Z", |
| 345 | + "shell.execute_reply": "2024-05-01T12:43:04.340736Z" |
346 | 346 | }
|
347 | 347 | },
|
348 | 348 | "outputs": [
|
|
356 | 356 | "\r\n",
|
357 | 357 | "please submit bugs to https://github.com/votca/votca/issues\r\n",
|
358 | 358 | "\r\n",
|
359 |
| - "xtp_tools, version 2024-dev gitid: f9ac5e0 (compiled May 1 2024, 02:03:16)\r\n", |
| 359 | + "xtp_tools, version 2024-dev gitid: 62f254a (compiled May 1 2024, 12:40:44)\r\n", |
360 | 360 | "\r\n",
|
361 | 361 | "Initializing tool\r\n",
|
362 | 362 | "... spectrum Evaluating tool\r\n",
|
|
398 | 398 | "execution_count": 9,
|
399 | 399 | "metadata": {
|
400 | 400 | "execution": {
|
401 |
| - "iopub.execute_input": "2024-05-01T02:05:32.284965Z", |
402 |
| - "iopub.status.busy": "2024-05-01T02:05:32.284743Z", |
403 |
| - "iopub.status.idle": "2024-05-01T02:05:33.897437Z", |
404 |
| - "shell.execute_reply": "2024-05-01T02:05:33.896809Z" |
| 401 | + "iopub.execute_input": "2024-05-01T12:43:04.344212Z", |
| 402 | + "iopub.status.busy": "2024-05-01T12:43:04.343898Z", |
| 403 | + "iopub.status.idle": "2024-05-01T12:43:05.892558Z", |
| 404 | + "shell.execute_reply": "2024-05-01T12:43:05.891904Z" |
405 | 405 | }
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406 | 406 | },
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407 | 407 | "outputs": [
|
|
435 | 435 | "execution_count": 10,
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436 | 436 | "metadata": {
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437 | 437 | "execution": {
|
438 |
| - "iopub.execute_input": "2024-05-01T02:05:33.900804Z", |
439 |
| - "iopub.status.busy": "2024-05-01T02:05:33.900576Z", |
440 |
| - "iopub.status.idle": "2024-05-01T02:05:35.115188Z", |
441 |
| - "shell.execute_reply": "2024-05-01T02:05:35.114297Z" |
| 438 | + "iopub.execute_input": "2024-05-01T12:43:05.895586Z", |
| 439 | + "iopub.status.busy": "2024-05-01T12:43:05.895364Z", |
| 440 | + "iopub.status.idle": "2024-05-01T12:43:07.026441Z", |
| 441 | + "shell.execute_reply": "2024-05-01T12:43:07.025783Z" |
442 | 442 | }
|
443 | 443 | },
|
444 | 444 | "outputs": [
|
|
448 | 448 | "text": [
|
449 | 449 | "<>:5: SyntaxWarning: invalid escape sequence '\\s'\n",
|
450 | 450 | "<>:5: SyntaxWarning: invalid escape sequence '\\s'\n",
|
451 |
| - "/tmp/ipykernel_15117/3151737206.py:5: SyntaxWarning: invalid escape sequence '\\s'\n", |
| 451 | + "/tmp/ipykernel_15123/3151737206.py:5: SyntaxWarning: invalid escape sequence '\\s'\n", |
452 | 452 | " df = pd.read_table(\"methane_spectrum.dat\", comment=\"#\", sep='\\s+',names=columns)\n",
|
453 | 453 | "/usr/lib/python3.12/site-packages/seaborn/axisgrid.py:854: FutureWarning: \n",
|
454 | 454 | "\n",
|
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