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43 | 43 | "execution_count": 1,
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44 | 44 | "metadata": {
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45 | 45 | "execution": {
|
46 |
| - "iopub.execute_input": "2024-05-31T05:14:00.978301Z", |
47 |
| - "iopub.status.busy": "2024-05-31T05:14:00.978100Z", |
48 |
| - "iopub.status.idle": "2024-05-31T05:14:01.108490Z", |
49 |
| - "shell.execute_reply": "2024-05-31T05:14:01.107826Z" |
| 46 | + "iopub.execute_input": "2024-06-03T12:52:08.486411Z", |
| 47 | + "iopub.status.busy": "2024-06-03T12:52:08.486044Z", |
| 48 | + "iopub.status.idle": "2024-06-03T12:52:08.616902Z", |
| 49 | + "shell.execute_reply": "2024-06-03T12:52:08.616204Z" |
50 | 50 | }
|
51 | 51 | },
|
52 | 52 | "outputs": [
|
|
60 | 60 | "\r\n",
|
61 | 61 | "please submit bugs to https://github.com/votca/votca/issues\r\n",
|
62 | 62 | "\r\n",
|
63 |
| - "xtp_tools, version 2024-dev gitid: 421d44d (compiled May 31 2024, 05:12:12)\r\n", |
| 63 | + "xtp_tools, version 2024-dev gitid: 03d5bf1 (compiled Jun 3 2024, 12:50:20)\r\n", |
64 | 64 | "\r\n",
|
65 | 65 | "Runs excitation/charge transport tools\r\n",
|
66 | 66 | "\r\n",
|
|
110 | 110 | "execution_count": 2,
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111 | 111 | "metadata": {
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112 | 112 | "execution": {
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113 |
| - "iopub.execute_input": "2024-05-31T05:14:01.111629Z", |
114 |
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115 |
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116 |
| - "shell.execute_reply": "2024-05-31T05:14:06.275769Z" |
| 113 | + "iopub.execute_input": "2024-06-03T12:52:08.620257Z", |
| 114 | + "iopub.status.busy": "2024-06-03T12:52:08.619869Z", |
| 115 | + "iopub.status.idle": "2024-06-03T12:52:13.799688Z", |
| 116 | + "shell.execute_reply": "2024-06-03T12:52:13.799097Z" |
117 | 117 | }
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118 | 118 | },
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119 | 119 | "outputs": [],
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141 | 141 | "execution_count": 3,
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142 | 142 | "metadata": {
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143 | 143 | "execution": {
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144 |
| - "iopub.execute_input": "2024-05-31T05:14:06.279671Z", |
145 |
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146 |
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147 |
| - "shell.execute_reply": "2024-05-31T05:14:06.513969Z" |
| 144 | + "iopub.execute_input": "2024-06-03T12:52:13.804783Z", |
| 145 | + "iopub.status.busy": "2024-06-03T12:52:13.803581Z", |
| 146 | + "iopub.status.idle": "2024-06-03T12:52:14.039094Z", |
| 147 | + "shell.execute_reply": "2024-06-03T12:52:14.038540Z" |
148 | 148 | }
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149 | 149 | },
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150 | 150 | "outputs": [
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174 | 174 | "execution_count": 4,
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175 | 175 | "metadata": {
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176 | 176 | "execution": {
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177 |
| - "iopub.execute_input": "2024-05-31T05:14:06.517542Z", |
178 |
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179 |
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180 |
| - "shell.execute_reply": "2024-05-31T05:14:06.628230Z" |
| 177 | + "iopub.execute_input": "2024-06-03T12:52:14.042087Z", |
| 178 | + "iopub.status.busy": "2024-06-03T12:52:14.041694Z", |
| 179 | + "iopub.status.idle": "2024-06-03T12:52:14.152914Z", |
| 180 | + "shell.execute_reply": "2024-06-03T12:52:14.152263Z" |
181 | 181 | }
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182 | 182 | },
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183 | 183 | "outputs": [
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221 | 221 | "execution_count": 5,
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222 | 222 | "metadata": {
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223 | 223 | "execution": {
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224 |
| - "iopub.execute_input": "2024-05-31T05:14:06.632020Z", |
225 |
| - "iopub.status.busy": "2024-05-31T05:14:06.631820Z", |
226 |
| - "iopub.status.idle": "2024-05-31T05:14:06.742478Z", |
227 |
| - "shell.execute_reply": "2024-05-31T05:14:06.741887Z" |
| 224 | + "iopub.execute_input": "2024-06-03T12:52:14.155956Z", |
| 225 | + "iopub.status.busy": "2024-06-03T12:52:14.155580Z", |
| 226 | + "iopub.status.idle": "2024-06-03T12:52:14.265600Z", |
| 227 | + "shell.execute_reply": "2024-06-03T12:52:14.265111Z" |
228 | 228 | }
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229 | 229 | },
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230 | 230 | "outputs": [
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253 | 253 | "execution_count": 6,
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254 | 254 | "metadata": {
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255 | 255 | "execution": {
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256 |
| - "iopub.execute_input": "2024-05-31T05:14:06.745507Z", |
257 |
| - "iopub.status.busy": "2024-05-31T05:14:06.744882Z", |
258 |
| - "iopub.status.idle": "2024-05-31T05:14:11.186317Z", |
259 |
| - "shell.execute_reply": "2024-05-31T05:14:11.185740Z" |
| 256 | + "iopub.execute_input": "2024-06-03T12:52:14.268317Z", |
| 257 | + "iopub.status.busy": "2024-06-03T12:52:14.267949Z", |
| 258 | + "iopub.status.idle": "2024-06-03T12:52:18.765140Z", |
| 259 | + "shell.execute_reply": "2024-06-03T12:52:18.764496Z" |
260 | 260 | }
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261 | 261 | },
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262 | 262 | "outputs": [],
|
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284 | 284 | "execution_count": 7,
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285 | 285 | "metadata": {
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286 | 286 | "execution": {
|
287 |
| - "iopub.execute_input": "2024-05-31T05:14:11.189801Z", |
288 |
| - "iopub.status.busy": "2024-05-31T05:14:11.189315Z", |
289 |
| - "iopub.status.idle": "2024-05-31T05:14:13.861137Z", |
290 |
| - "shell.execute_reply": "2024-05-31T05:14:13.860466Z" |
| 287 | + "iopub.execute_input": "2024-06-03T12:52:18.768353Z", |
| 288 | + "iopub.status.busy": "2024-06-03T12:52:18.768025Z", |
| 289 | + "iopub.status.idle": "2024-06-03T12:52:21.437874Z", |
| 290 | + "shell.execute_reply": "2024-06-03T12:52:21.437197Z" |
291 | 291 | }
|
292 | 292 | },
|
293 | 293 | "outputs": [
|
|
301 | 301 | "\r\n",
|
302 | 302 | "please submit bugs to https://github.com/votca/votca/issues\r\n",
|
303 | 303 | "\r\n",
|
304 |
| - "xtp_tools, version 2024-dev gitid: 421d44d (compiled May 31 2024, 05:12:12)\r\n", |
| 304 | + "xtp_tools, version 2024-dev gitid: 03d5bf1 (compiled Jun 3 2024, 12:50:20)\r\n", |
305 | 305 | "\r\n",
|
306 | 306 | "Initializing tool\r\n",
|
307 | 307 | "... partialcharges Evaluating tool\r\n",
|
|
315 | 315 | "output_type": "stream",
|
316 | 316 | "text": [
|
317 | 317 | "\r\n",
|
318 |
| - "... ... 2024-5-31 5:14:11 Calculated Densities at Numerical Grid, Number of electrons is -2.37461e-08\r\n", |
319 |
| - "... ... 2024-5-31 5:14:11 Calculating ESP at CHELPG grid points" |
| 318 | + "... ... 2024-6-3 12:52:19 Calculated Densities at Numerical Grid, Number of electrons is -2.37461e-08\r\n", |
| 319 | + "... ... 2024-6-3 12:52:19 Calculating ESP at CHELPG grid points" |
320 | 320 | ]
|
321 | 321 | },
|
322 | 322 | {
|
323 | 323 | "name": "stdout",
|
324 | 324 | "output_type": "stream",
|
325 | 325 | "text": [
|
326 | 326 | "\r\n",
|
327 |
| - "... ... 2024-5-31 5:14:13 Netcharge constrained to 0\r\n", |
328 |
| - "... ... Sum of fitted charges: 2.41994e-14\r\n", |
| 327 | + "... ... 2024-6-3 12:52:21 Netcharge constrained to 0\r\n", |
| 328 | + "... ... Sum of fitted charges: 2.41543e-14\r\n", |
329 | 329 | "... ... RMSE of fit: 0.00221585\r\n",
|
330 | 330 | "... ... RRMSE of fit: 0.107179\r\n",
|
331 | 331 | "... ... El Dipole from fitted charges [e*bohr]:\r\n",
|
|
353 | 353 | "execution_count": 8,
|
354 | 354 | "metadata": {
|
355 | 355 | "execution": {
|
356 |
| - "iopub.execute_input": "2024-05-31T05:14:13.864207Z", |
357 |
| - "iopub.status.busy": "2024-05-31T05:14:13.864004Z", |
358 |
| - "iopub.status.idle": "2024-05-31T05:14:13.999297Z", |
359 |
| - "shell.execute_reply": "2024-05-31T05:14:13.998741Z" |
| 356 | + "iopub.execute_input": "2024-06-03T12:52:21.441236Z", |
| 357 | + "iopub.status.busy": "2024-06-03T12:52:21.440853Z", |
| 358 | + "iopub.status.idle": "2024-06-03T12:52:21.576100Z", |
| 359 | + "shell.execute_reply": "2024-06-03T12:52:21.575465Z" |
360 | 360 | }
|
361 | 361 | },
|
362 | 362 | "outputs": [
|
|
370 | 370 | "\r\n",
|
371 | 371 | "please submit bugs to https://github.com/votca/votca/issues\r\n",
|
372 | 372 | "\r\n",
|
373 |
| - "xtp_tools, version 2024-dev gitid: 421d44d (compiled May 31 2024, 05:12:12)\r\n", |
| 373 | + "xtp_tools, version 2024-dev gitid: 03d5bf1 (compiled Jun 3 2024, 12:50:20)\r\n", |
374 | 374 | "\r\n",
|
375 | 375 | "Initializing tool\r\n",
|
376 | 376 | "... spectrum Evaluating tool\r\n",
|
|
412 | 412 | "execution_count": 9,
|
413 | 413 | "metadata": {
|
414 | 414 | "execution": {
|
415 |
| - "iopub.execute_input": "2024-05-31T05:14:14.002414Z", |
416 |
| - "iopub.status.busy": "2024-05-31T05:14:14.001941Z", |
417 |
| - "iopub.status.idle": "2024-05-31T05:14:15.704399Z", |
418 |
| - "shell.execute_reply": "2024-05-31T05:14:15.703743Z" |
| 415 | + "iopub.execute_input": "2024-06-03T12:52:21.579372Z", |
| 416 | + "iopub.status.busy": "2024-06-03T12:52:21.579172Z", |
| 417 | + "iopub.status.idle": "2024-06-03T12:52:23.295098Z", |
| 418 | + "shell.execute_reply": "2024-06-03T12:52:23.294522Z" |
419 | 419 | }
|
420 | 420 | },
|
421 | 421 | "outputs": [
|
|
467 | 467 | "execution_count": 10,
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468 | 468 | "metadata": {
|
469 | 469 | "execution": {
|
470 |
| - "iopub.execute_input": "2024-05-31T05:14:15.707592Z", |
471 |
| - "iopub.status.busy": "2024-05-31T05:14:15.707186Z", |
472 |
| - "iopub.status.idle": "2024-05-31T05:14:16.777501Z", |
473 |
| - "shell.execute_reply": "2024-05-31T05:14:16.776919Z" |
| 470 | + "iopub.execute_input": "2024-06-03T12:52:23.298040Z", |
| 471 | + "iopub.status.busy": "2024-06-03T12:52:23.297852Z", |
| 472 | + "iopub.status.idle": "2024-06-03T12:52:24.365870Z", |
| 473 | + "shell.execute_reply": "2024-06-03T12:52:24.364866Z" |
474 | 474 | }
|
475 | 475 | },
|
476 | 476 | "outputs": [
|
|
480 | 480 | "text": [
|
481 | 481 | "<>:5: SyntaxWarning: invalid escape sequence '\\s'\n",
|
482 | 482 | "<>:5: SyntaxWarning: invalid escape sequence '\\s'\n",
|
483 |
| - "/tmp/ipykernel_11593/3151737206.py:5: SyntaxWarning: invalid escape sequence '\\s'\n", |
| 483 | + "/tmp/ipykernel_11595/3151737206.py:5: SyntaxWarning: invalid escape sequence '\\s'\n", |
484 | 484 | " df = pd.read_table(\"methane_spectrum.dat\", comment=\"#\", sep='\\s+',names=columns)\n"
|
485 | 485 | ]
|
486 | 486 | },
|
|
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