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bifd.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="https://wba-initiative.org/bifd/"
xml:base="https://wba-initiative.org/bifd/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:bifd="https://wba-initiative.org/bifd/"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:bifd1="https://wba-initiative.org/ontology/bifd/">
<owl:Ontology rdf:about="https://wba-initiative.org/ontology/bifd/">
<owl:versionIRI rdf:resource="https://wba-initiative.org/ontology/bifd/"/>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- https://wba-initiative.org/ontology/bifd/functionality -->
<owl:AnnotationProperty rdf:about="https://wba-initiative.org/ontology/bifd/functionality">
<rdfs:comment>Description of the function</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2000/01/rdf-schema#comment"/>
</owl:AnnotationProperty>
<!-- https://wba-initiative.org/ontology/bifd/implementation -->
<owl:AnnotationProperty rdf:about="https://wba-initiative.org/ontology/bifd/implementation">
<rdfs:comment>A pointer (e.g., URL) to implementation</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2000/01/rdf-schema#comment"/>
</owl:AnnotationProperty>
<!-- https://wba-initiative.org/ontology/bifd/reference -->
<owl:AnnotationProperty rdf:about="https://wba-initiative.org/ontology/bifd/reference">
<rdfs:comment>A pointer (doi, ISBN, etc.) to material to support the description</rdfs:comment>
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2000/01/rdf-schema#comment"/>
</owl:AnnotationProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- https://wba-initiative.org/bifd/hasPart -->
<owl:ObjectProperty rdf:about="https://wba-initiative.org/bifd/hasPart">
<owl:inverseOf rdf:resource="https://wba-initiative.org/bifd/partOf"/>
</owl:ObjectProperty>
<!-- https://wba-initiative.org/bifd/inputCircuit -->
<owl:ObjectProperty rdf:about="https://wba-initiative.org/bifd/inputCircuit">
<rdfs:domain rdf:resource="https://wba-initiative.org/bifd/Circuit"/>
<rdfs:range rdf:resource="https://wba-initiative.org/bifd/Circuit"/>
<rdfs:label>inputCircuit</rdfs:label>
</owl:ObjectProperty>
<!-- https://wba-initiative.org/bifd/outputCircuit -->
<owl:ObjectProperty rdf:about="https://wba-initiative.org/bifd/outputCircuit">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:domain rdf:resource="https://wba-initiative.org/bifd/Circuit"/>
<rdfs:range rdf:resource="https://wba-initiative.org/bifd/Circuit"/>
<rdfs:label>outputCircuit</rdfs:label>
</owl:ObjectProperty>
<!-- https://wba-initiative.org/bifd/partOf -->
<owl:ObjectProperty rdf:about="https://wba-initiative.org/bifd/partOf">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:domain rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
<rdfs:range rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
<rdfs:label>partOf</rdfs:label>
</owl:ObjectProperty>
<!-- https://wba-initiative.org/bifd/transmitter -->
<owl:ObjectProperty rdf:about="https://wba-initiative.org/bifd/transmitter">
<rdfs:subPropertyOf rdf:resource="http://www.w3.org/2002/07/owl#topObjectProperty"/>
<rdfs:domain rdf:resource="https://wba-initiative.org/bifd/Connection"/>
<rdfs:range rdf:resource="https://wba-initiative.org/bifd/NeuroTransmitter"/>
<rdfs:label>transmitter</rdfs:label>
</owl:ObjectProperty>
<!-- https://wba-initiative.org/ontology/bifd/modType -->
<owl:ObjectProperty rdf:about="https://wba-initiative.org/ontology/bifd/modType">
<rdfs:range rdf:resource="https://wba-initiative.org/ontology/bifd/ModType"/>
</owl:ObjectProperty>
<!-- https://wba-initiative.org/ontology/bifd/morphology -->
<owl:ObjectProperty rdf:about="https://wba-initiative.org/ontology/bifd/morphology">
<rdfs:range>
<owl:Restriction>
<owl:onProperty rdf:resource="https://wba-initiative.org/ontology/bifd/morphology"/>
<owl:allValuesFrom rdf:resource="https://wba-initiative.org/ontology/bifd/SomaMorphology"/>
</owl:Restriction>
</rdfs:range>
</owl:ObjectProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Data properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- https://wba-initiative.org/bifd/size -->
<owl:DatatypeProperty rdf:about="https://wba-initiative.org/bifd/size">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#nonNegativeInteger"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A number of neurons (for a Circuit) or axons (for a Connection)</rdfs:comment>
</owl:DatatypeProperty>
<!-- https://wba-initiative.org/bifd/uniform -->
<owl:DatatypeProperty rdf:about="https://wba-initiative.org/bifd/uniform">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#FunctionalProperty"/>
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#boolean"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">True iff the Circuit is uniform</rdfs:comment>
</owl:DatatypeProperty>
<!-- https://wba-initiative.org/ontology/bifd/taxon -->
<owl:DatatypeProperty rdf:about="https://wba-initiative.org/ontology/bifd/taxon">
<rdfs:range rdf:resource="http://www.w3.org/2001/XMLSchema#string"/>
<rdfs:comment>Specifies an ID (such as URI or interwiki link) representing an animal type (taxon).</rdfs:comment>
</owl:DatatypeProperty>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- https://wba-initiative.org/bifd/Circuit -->
<owl:Class rdf:about="https://wba-initiative.org/bifd/Circuit">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="https://wba-initiative.org/bifd/hasPart"/>
<owl:allValuesFrom rdf:resource="https://wba-initiative.org/bifd/Circuit"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="https://wba-initiative.org/bifd/uniform"/>
<owl:allValuesFrom rdf:resource="http://www.w3.org/2001/XMLSchema#boolean"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A set of neurons with a particular function</rdfs:comment>
<rdfs:label>Circuit</rdfs:label>
</owl:Class>
<!-- https://wba-initiative.org/bifd/Connection -->
<owl:Class rdf:about="https://wba-initiative.org/bifd/Connection">
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="https://wba-initiative.org/bifd/inputCircuit"/>
<owl:someValuesFrom rdf:resource="https://wba-initiative.org/bifd/Circuit"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="https://wba-initiative.org/bifd/outputCircuit"/>
<owl:someValuesFrom rdf:resource="https://wba-initiative.org/bifd/Circuit"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="https://wba-initiative.org/bifd/transmitter"/>
<owl:someValuesFrom rdf:resource="https://wba-initiative.org/bifd/NeuroTransmitter"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="https://wba-initiative.org/ontology/bifd/modType"/>
<owl:allValuesFrom rdf:resource="https://wba-initiative.org/ontology/bifd/ModType"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="https://wba-initiative.org/bifd/size"/>
<owl:someValuesFrom rdf:resource="http://www.w3.org/2001/XMLSchema#nonNegativeInteger"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A connection from a Circuit to another Circuit.</rdfs:comment>
<rdfs:label>Connection</rdfs:label>
</owl:Class>
<!-- https://wba-initiative.org/bifd/NeuroTransmitter -->
<owl:Class rdf:about="https://wba-initiative.org/bifd/NeuroTransmitter">
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A type of neuro-transmitter.</rdfs:comment>
<rdfs:label>NeuroTransmitter</rdfs:label>
</owl:Class>
<!-- https://wba-initiative.org/bifd/UniformCircuit -->
<owl:Class rdf:about="https://wba-initiative.org/bifd/UniformCircuit">
<rdfs:subClassOf rdf:resource="https://wba-initiative.org/bifd/Circuit"/>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="https://wba-initiative.org/bifd/transmitter"/>
<owl:someValuesFrom rdf:resource="https://wba-initiative.org/bifd/NeuroTransmitter"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="https://wba-initiative.org/ontology/bifd/modType"/>
<owl:allValuesFrom rdf:resource="https://wba-initiative.org/ontology/bifd/ModType"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="https://wba-initiative.org/bifd/size"/>
<owl:someValuesFrom rdf:resource="http://www.w3.org/2001/XMLSchema#nonNegativeInteger"/>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:subClassOf>
<owl:Restriction>
<owl:onProperty rdf:resource="https://wba-initiative.org/bifd/uniform"/>
<owl:hasValue rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:hasValue>
</owl:Restriction>
</rdfs:subClassOf>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A Circuit containing neurons with a uniform function.</rdfs:comment>
</owl:Class>
<!-- https://wba-initiative.org/ontology/bifd/ModType -->
<owl:Class rdf:about="https://wba-initiative.org/ontology/bifd/ModType"/>
<!-- https://wba-initiative.org/ontology/bifd/SomaMorphology -->
<owl:Class rdf:about="https://wba-initiative.org/ontology/bifd/SomaMorphology">
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The shape of a soma</rdfs:comment>
</owl:Class>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Individuals
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- https://wba-initiative.org/bifd/Dopamin -->
<owl:NamedIndividual rdf:about="https://wba-initiative.org/bifd/Dopamin">
<rdf:type rdf:resource="https://wba-initiative.org/bifd/NeuroTransmitter"/>
<rdfs:label>Dopamin</rdfs:label>
</owl:NamedIndividual>
<!-- https://wba-initiative.org/bifd/GABA -->
<owl:NamedIndividual rdf:about="https://wba-initiative.org/bifd/GABA">
<rdf:type rdf:resource="https://wba-initiative.org/bifd/NeuroTransmitter"/>
<rdfs:label>GABA</rdfs:label>
</owl:NamedIndividual>
<!-- https://wba-initiative.org/ontology/bifd/Acetylcholine -->
<owl:NamedIndividual rdf:about="https://wba-initiative.org/ontology/bifd/Acetylcholine">
<rdf:type rdf:resource="https://wba-initiative.org/bifd/NeuroTransmitter"/>
<rdfs:label>Acetylcholine</rdfs:label>
</owl:NamedIndividual>
<!-- https://wba-initiative.org/ontology/bifd/Excitatory -->
<owl:NamedIndividual rdf:about="https://wba-initiative.org/ontology/bifd/Excitatory">
<rdf:type rdf:resource="https://wba-initiative.org/ontology/bifd/ModType"/>
<rdfs:label>Excitatory</rdfs:label>
</owl:NamedIndividual>
<!-- https://wba-initiative.org/ontology/bifd/Glutamate -->
<owl:NamedIndividual rdf:about="https://wba-initiative.org/ontology/bifd/Glutamate">
<rdf:type rdf:resource="https://wba-initiative.org/bifd/NeuroTransmitter"/>
<rdfs:label>Glutamate</rdfs:label>
</owl:NamedIndividual>
<!-- https://wba-initiative.org/ontology/bifd/Inhibitory -->
<owl:NamedIndividual rdf:about="https://wba-initiative.org/ontology/bifd/Inhibitory">
<rdf:type rdf:resource="https://wba-initiative.org/ontology/bifd/ModType"/>
<rdfs:label>Inhibitory</rdfs:label>
</owl:NamedIndividual>
<!-- https://wba-initiative.org/ontology/bifd/Modulatory -->
<owl:NamedIndividual rdf:about="https://wba-initiative.org/ontology/bifd/Modulatory">
<rdf:type rdf:resource="https://wba-initiative.org/ontology/bifd/ModType"/>
<rdfs:label>Modulatory</rdfs:label>
</owl:NamedIndividual>
</rdf:RDF>
<!-- Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi -->