BA7C.py

#!/usr/bin/env python

# Copyright (C) 2017-2013 Greenweaves Software Limited

# This is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.

# This software is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.

# You should have received a copy of the GNU General Public License
# along with GNU Emacs.  If not, see <http://www.gnu.org/licenses/>

'''BA7C Implement Additive Phylogeny'''

import numpy as np
from phylogeny import AdditivePhylogeny
from helpers   import read_matrix


if __name__=='__main__':

    params,D=read_matrix(name='Additive_Phylogeny')
    AdditivePhylogeny(np.array(D),params[0]).print_adjacency()