From cdd5acb57e4adb92582e5a5c1b9657c552ff60ae Mon Sep 17 00:00:00 2001 From: Jonathan Fisher <49597360+jpfisher72@users.noreply.github.com> Date: Thu, 1 Feb 2024 12:39:02 -0500 Subject: [PATCH] Update dependencies, add suspense boundary (#285) --- screen2.0/package.json | 12 +- .../differential-gene-expression/page.tsx | 9 +- .../src/app/applets/gene-expression/page.tsx | 11 +- .../search/_ccredetails/geneexpression.tsx | 1 + screen2.0/yarn.lock | 256 ++++++++++-------- 5 files changed, 156 insertions(+), 133 deletions(-) diff --git a/screen2.0/package.json b/screen2.0/package.json index 54350e9a..b57b8b5a 100644 --- a/screen2.0/package.json +++ b/screen2.0/package.json @@ -36,26 +36,26 @@ }, "dependencies": { "@apollo/client": "alpha", - "@apollo/experimental-nextjs-app-support": "^0.6.0", + "@apollo/experimental-nextjs-app-support": "^0.7.0", "@emailjs/browser": "^3.12.1", "@emotion/react": "^11.11.1", "@emotion/styled": "^11.11.0", "@mui/icons-material": "^5.15.2", "@mui/lab": "^5.0.0-alpha.158", "@mui/material": "^5.15.4", - "@types/node": "^20.10.8", + "@types/node": "^20.11.3", "@types/react": "^18.2.47", "@types/react-dom": "18.2.18", "@weng-lab/psychscreen-ui-components": "^0.8.6", "@weng-lab/ts-ztable": "^4.0.1", - "autoprefixer": "10.4.16", + "autoprefixer": "10.4.17", "bpnet-ui": "^0.3.8", "eslint": "8.56.0", - "eslint-config-next": "14.0.4", + "eslint-config-next": "14.1.0", "graphql": "^16.8.1", "jubilant-carnival": "^0.6.0", "logots-react": "latest", - "next": "14.0.4", + "next": "14.1.0", "normalize.css": "^8.0.1", "only": "^0.0.2", "postcss": "8.4.33", @@ -76,7 +76,7 @@ "file-loader": "^6.2.0", "lint-staged": "^15.1.0", "prettier": "^3.0.2", - "webpack": "^5.89.0", + "webpack": "^5.90.0", "webpack-cli": "^5.1.4" }, "prettier": { diff --git a/screen2.0/src/app/applets/differential-gene-expression/page.tsx b/screen2.0/src/app/applets/differential-gene-expression/page.tsx index 55396df7..4ee757a0 100644 --- a/screen2.0/src/app/applets/differential-gene-expression/page.tsx +++ b/screen2.0/src/app/applets/differential-gene-expression/page.tsx @@ -41,18 +41,17 @@ import { initialhighlight } from "./const" * Additionally, it plots the genes occupational coordinates and their strand. * @returns differential gene expression app */ -export default function DifferentialGeneExpression() { - const searchParams: ReadonlyURLSearchParams = useSearchParams()! +export default function DifferentialGeneExpression({ searchParams }: { searchParams: { [key: string]: string | undefined } }) { const router = useRouter() const pathname = usePathname() - if (!searchParams.get("assembly")) router.replace(pathname + "?assembly=GRCh38&chromosome=chr11") + if (!searchParams.assembly) router.replace(pathname + "?assembly=GRCh38&chromosome=chr11") const [loading, setLoading] = useState(true) const [open, setState] = useState(true) - const [assembly, setAssembly] = useState(searchParams.get("assembly") ? searchParams.get("assembly") : "GRCh38") - const [chromosome, setChromosome] = useState(searchParams.get("chromosome") ? searchParams.get("chromosome") : "chr11") + const [assembly, setAssembly] = useState(searchParams.assembly ?? "GRCh38") + const [chromosome, setChromosome] = useState(searchParams.chromosome ?? "chr11") const [gene, setGene] = useState(null) const [ct1, setct1] = useState("A172_ENCDO934VENA549_treated_with_0.02%_ethanol_for_1_hour_ENCDO000AAZ") diff --git a/screen2.0/src/app/applets/gene-expression/page.tsx b/screen2.0/src/app/applets/gene-expression/page.tsx index 045c0436..143087af 100644 --- a/screen2.0/src/app/applets/gene-expression/page.tsx +++ b/screen2.0/src/app/applets/gene-expression/page.tsx @@ -1,14 +1,17 @@ "use client" import { Box } from "@mui/material" import { GeneExpression } from "../../search/_ccredetails/geneexpression" +import { Suspense } from "react" export default function GeneExpressionApplet() { return ( - + + + ) } \ No newline at end of file diff --git a/screen2.0/src/app/search/_ccredetails/geneexpression.tsx b/screen2.0/src/app/search/_ccredetails/geneexpression.tsx index d8073a68..006fddda 100644 --- a/screen2.0/src/app/search/_ccredetails/geneexpression.tsx +++ b/screen2.0/src/app/search/_ccredetails/geneexpression.tsx @@ -33,6 +33,7 @@ const MenuProps = { }, }; +// 2/1/24: Why does this not have organoid? Noticed when fixing error with useSearchParams const biosampleTypes = ["cell line", "in vitro differentiated cells", "primary cell", "tissue"]; export function GeneExpression(props: { diff --git a/screen2.0/yarn.lock b/screen2.0/yarn.lock index 90c20fb9..54e3ead4 100644 --- a/screen2.0/yarn.lock +++ b/screen2.0/yarn.lock @@ -56,18 +56,18 @@ __metadata: languageName: node linkType: hard -"@apollo/experimental-nextjs-app-support@npm:^0.6.0": - version: 0.6.0 - resolution: "@apollo/experimental-nextjs-app-support@npm:0.6.0" +"@apollo/experimental-nextjs-app-support@npm:^0.7.0": + version: 0.7.1 + resolution: "@apollo/experimental-nextjs-app-support@npm:0.7.1" dependencies: server-only: ^0.0.1 - superjson: ^1.12.2 + superjson: ^1.12.2 || ^2.0.0 ts-invariant: ^0.10.3 peerDependencies: - "@apollo/client": ">=3.8.0-rc || ^3.8.0 || >=3.9.0-alpha || >=3.9.0-beta || >=3.9.0-rc" + "@apollo/client": ">=3.8.0-rc || ^3.8.0 || >=3.9.0-alpha || >=3.9.0-beta || >=3.9.0-rc || ^3.9.0" next: ^13.4.1 || ^14.0.0 react: ^18 - 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version: 5.89.0 - resolution: "webpack@npm:5.89.0" +"webpack@npm:^5.90.0": + version: 5.90.0 + resolution: "webpack@npm:5.90.0" dependencies: "@types/eslint-scope": ^3.7.3 - "@types/estree": ^1.0.0 + "@types/estree": ^1.0.5 "@webassemblyjs/ast": ^1.11.5 "@webassemblyjs/wasm-edit": ^1.11.5 "@webassemblyjs/wasm-parser": ^1.11.5 acorn: ^8.7.1 acorn-import-assertions: ^1.9.0 - browserslist: ^4.14.5 + browserslist: ^4.21.10 chrome-trace-event: ^1.0.2 enhanced-resolve: ^5.15.0 es-module-lexer: ^1.2.1 @@ -8376,7 +8396,7 @@ semantic-ui-react@latest: neo-async: ^2.6.2 schema-utils: ^3.2.0 tapable: ^2.1.1 - terser-webpack-plugin: ^5.3.7 + terser-webpack-plugin: ^5.3.10 watchpack: ^2.4.0 webpack-sources: ^3.2.3 peerDependenciesMeta: @@ -8384,7 +8404,7 @@ semantic-ui-react@latest: optional: true bin: webpack: bin/webpack.js - checksum: 43fe0dbc30e168a685ef5a86759d5016a705f6563b39a240aa00826a80637d4a3deeb8062e709d6a4b05c63e796278244c84b04174704dc4a37bedb0f565c5ed + checksum: 178a0e7e9e5b26264a19dd5fe554a3508a8afafc9cce972bfd4452b5128d0db1b37832f5e615be1cff1934f24da0de967929f199be2b3fe283ca1951f98ea3fe languageName: node linkType: hard