mkdocs.yml

site_name: LogosJ
repo_name: logojs-package
repo_url: https://github.com/weng-lab/logojs-package
site_description: "LogosJ embeddable sequence logos"
site_author: Henry Pratt
remote_branch: master

copyright: 'Copyright © 2019 Weng Lab'

theme:
  name: 'material'
  logo: img/logojs.svg
  favicon: img/favicon.ico
  palette:
    primary: 'blue grey'
    accent: 'amber'

extra_css:
  - 'css/extra.css'

markdown_extensions:
  - admonition
  - meta
  - smarty
  - codehilite:
      guess_lang: false
  - footnotes
  - toc:
      permalink: true
  - pymdownx.betterem:
      smart_enable: all
  - pymdownx.caret
  - pymdownx.inlinehilite
  - pymdownx.magiclink
  - pymdownx.smartsymbols
  - pymdownx.superfences

nav:
  - 'Quick start: common logos':
      - 'DNA logos': dna_logos.md
      - 'RNA logos': rna_logos.md
      - 'Protein logos': protein_logos.md
  - 'Building blocks: glyphs and alphabets':
      - 'Glyphs and custom symbols': glyph.md
      - 'Built-in and custom alphabets': alphabet.md
  - 'Custom logos':
      - 'Custom alphabets': custom/#custom-alphabets
      - 'Negative letters': custom/#negative-letters
      - 'Logos without axes': custom/#logos-without-axes
      - 'Advanced annotations': custom/#custom-annotations