From 3dd120915a68cdd9bd3ef17be071d6c795ce5051 Mon Sep 17 00:00:00 2001 From: "Yuichiro Tachibana (Tsuchiya)" Date: Wed, 29 May 2024 10:36:01 +0100 Subject: [PATCH] Update Pyodide to 0.26.0 (#934) * Update Pyodide to 0.26.0 * Set Python version as 3.12.1 * Set Python version in packages/kernel/py/stlite-server/pyproject.toml * Update .gitignore * Specify engines.node in desktop/package.json and remove node-fetch * Fix the Python version in gh-pages.yml * Fix worker-runtime to handle LiteralMap, which was introduced in Pyodide 0.26.0 --- .github/workflows/gh-pages.yml | 2 +- .github/workflows/main.yml | 2 +- .gitignore | 1 + Makefile | 2 +- .../desktop/bin-src/dump_artifacts/index.ts | 6 +- .../dump_artifacts/pyodide_packages.ts | 1 - packages/desktop/package.json | 9 +- packages/desktop/scripts/build_bin.js | 1 - packages/desktop/scripts/copy_wheels.js | 2 +- packages/kernel/package.json | 2 +- packages/kernel/py/stlite-server/poetry.lock | 1524 +++++++++-------- .../kernel/py/stlite-server/pyproject.toml | 2 +- packages/kernel/src/kernel.ts | 2 +- packages/kernel/src/worker-runtime.ts | 2 +- packages/kernel/src/worker.ts | 2 +- requirements.dev.txt | 2 +- yarn.lock | 14 +- 17 files changed, 801 insertions(+), 775 deletions(-) diff --git a/.github/workflows/gh-pages.yml b/.github/workflows/gh-pages.yml index a43fbfdf4..f3ca1ed9b 100644 --- a/.github/workflows/gh-pages.yml +++ b/.github/workflows/gh-pages.yml @@ -22,7 +22,7 @@ jobs: target: ["mountable"] env: - python-version: "3.11.2" + python-version: "3.12.1" # To avoid an error like "FATAL ERROR: Reached heap limit Allocation failed - JavaScript heap out of memory". # See https://github.com/actions/virtual-environments/issues/70#issuecomment-653886422 # The Linux VM has 7GB RAM (https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners#supported-runners-and-hardware-resources), diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index b8d0766ca..ff8c76953 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -13,7 +13,7 @@ concurrency: cancel-in-progress: ${{ github.ref != 'refs/heads/main' }} env: - python-version: "3.11.2" + python-version: "3.12.1" # To avoid an error like "FATAL ERROR: Reached heap limit Allocation failed - JavaScript heap out of memory". # See https://github.com/actions/virtual-environments/issues/70#issuecomment-653886422 # The Linux VM has 7GB RAM (https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners#supported-runners-and-hardware-resources), diff --git a/.gitignore b/.gitignore index 585bf3008..1c2529231 100644 --- a/.gitignore +++ b/.gitignore @@ -297,6 +297,7 @@ tags ### Others .pyodide-xbuildenv/ +.pyodide-xbuildenv-*/ # sed backup files on macOS *.*-e diff --git a/Makefile b/Makefile index 205007f72..e7a366091 100644 --- a/Makefile +++ b/Makefile @@ -8,7 +8,7 @@ desktop := packages/desktop/build/* kernel := packages/kernel/dist/* stlite-server-wheel := packages/kernel/py/stlite-server/dist/stlite_server-0.1.0-py3-none-any.whl streamlit_proto := streamlit/frontend/lib/src/proto.d.ts -streamlit_wheel := packages/kernel/py/streamlit/lib/dist/streamlit-1.35.0-cp311-none-any.whl +streamlit_wheel := packages/kernel/py/streamlit/lib/dist/streamlit-1.35.0-cp312-none-any.whl streamlit_frontend_lib_prod := streamlit/frontend/lib/dist/* .PHONY: all diff --git a/packages/desktop/bin-src/dump_artifacts/index.ts b/packages/desktop/bin-src/dump_artifacts/index.ts index 95c119de4..205d835e6 100755 --- a/packages/desktop/bin-src/dump_artifacts/index.ts +++ b/packages/desktop/bin-src/dump_artifacts/index.ts @@ -5,7 +5,6 @@ import { hideBin } from "yargs/helpers"; import path from "node:path"; import fsPromises from "node:fs/promises"; import fsExtra from "fs-extra"; -import fetch from "node-fetch"; import { loadPyodide, type PyodideInterface } from "pyodide"; import { makePyodideUrl } from "./url"; import { PrebuiltPackagesData } from "./pyodide_packages"; @@ -15,9 +14,6 @@ import { validateRequirements, parseRequirementsTxt } from "@stlite/common"; import { glob } from "glob"; import { logger } from "./logger"; -// @ts-ignore -global.fetch = fetch; // The global `fetch()` is necessary for micropip.install() to load the remote packages. - const pathFromScriptToBuild = process.env.PATH_FROM_SCRIPT_TO_BUILD ?? "../../build"; const pathFromScriptToWheels = @@ -141,7 +137,7 @@ async function installPackages( requirements.push(stliteServerWheel); const streamlitWheel = await prepareLocalWheel( pyodide, - path.join(wheelsDir, "streamlit-1.35.0-cp311-none-any.whl") + path.join(wheelsDir, "streamlit-1.35.0-cp312-none-any.whl") ); requirements.push(streamlitWheel); diff --git a/packages/desktop/bin-src/dump_artifacts/pyodide_packages.ts b/packages/desktop/bin-src/dump_artifacts/pyodide_packages.ts index 92a5ee786..423b749db 100644 --- a/packages/desktop/bin-src/dump_artifacts/pyodide_packages.ts +++ b/packages/desktop/bin-src/dump_artifacts/pyodide_packages.ts @@ -1,4 +1,3 @@ -import fetch from "node-fetch"; import { makePyodideUrl } from "./url"; import { logger } from "./logger"; diff --git a/packages/desktop/package.json b/packages/desktop/package.json index 118294b4c..7b12660f7 100644 --- a/packages/desktop/package.json +++ b/packages/desktop/package.json @@ -11,6 +11,9 @@ "url": "https://github.com/whitphx/stlite/issues" }, "homepage": "/", + "engines": { + "node": ">=18" + }, "main": "./build/electron/main.js", "files": [ "build", @@ -28,7 +31,7 @@ "eject": "craco eject", "start:electron": "tsc -p electron && cross-env NODE_ENV=development concurrently \"./scripts/build_electron.js --watch\" \"electron .\"", "build:electron": "tsc -p electron && cross-env NODE_ENV=production ./scripts/build_electron.js", - "build:pyodide": "curl -L https://github.com/pyodide/pyodide/releases/download/0.25.1/pyodide-core-0.25.1.tar.bz2 | tar xj -C ./build --files-from=./pyodide-files.txt", + "build:pyodide": "curl -L https://github.com/pyodide/pyodide/releases/download/0.26.0/pyodide-core-0.26.0.tar.bz2 | tar xj -C ./build --files-from=./pyodide-files.txt", "build:bin": "tsc -p bin-src && ./scripts/build_bin.js", "build:wheels": "./scripts/copy_wheels.js", "typecheck": "yarn tsc --noEmit -p electron", @@ -62,8 +65,7 @@ "//": "The packages not bundled with bin/dump_artifacts.js must be specified here as the runtime dependencies. See `scripts/build_bin.js` for the details.", "dependencies": { "fs-extra": "^11.2.0", - "node-fetch": "2", - "pyodide": "0.25.1", + "pyodide": "0.26.0", "yargs": "^17.7.2" }, "devDependencies": { @@ -76,7 +78,6 @@ "@testing-library/user-event": "^14.0.0", "@types/jest": "^27.4.3", "@types/node": "^16.18.12", - "@types/node-fetch": "^2.6.11", "@types/react": "^17.0.7", "@types/react-dom": "^17.0.5", "@types/yargs": "^17.0.32", diff --git a/packages/desktop/scripts/build_bin.js b/packages/desktop/scripts/build_bin.js index 9aa3ba3ab..c4c8895d8 100755 --- a/packages/desktop/scripts/build_bin.js +++ b/packages/desktop/scripts/build_bin.js @@ -16,7 +16,6 @@ require("esbuild") platform: "node", external: [ "pyodide", // The `pyodide` package must be installed at runtime for the included Wasm files, so there is no reason to bundle it here. - "node-fetch", // `node-fetch` will be installed at runtime anyway because it is one dependency of the `pyodide` package, so there is no reason to bundle it here. "fs-extra", // `fs-extra` and `yargs` will be installed at runtime anyway as the dependencies of `electron-builder`, so we don't have to bundle them here. "yargs", // Same as above, `fs-extra`. ], diff --git a/packages/desktop/scripts/copy_wheels.js b/packages/desktop/scripts/copy_wheels.js index d9d6eae9d..4413d9a7c 100755 --- a/packages/desktop/scripts/copy_wheels.js +++ b/packages/desktop/scripts/copy_wheels.js @@ -22,7 +22,7 @@ async function main() { ); const streamlitWheelPath = path.join( stliteKernelPyDir, - "streamlit/lib/dist/streamlit-1.35.0-cp311-none-any.whl" + "streamlit/lib/dist/streamlit-1.35.0-cp312-none-any.whl" ); // Create the `wheels` directory diff --git a/packages/kernel/package.json b/packages/kernel/package.json index f576f3af9..4249746f1 100644 --- a/packages/kernel/package.json +++ b/packages/kernel/package.json @@ -27,7 +27,7 @@ "eslint": "^8.33.0", "eslint-plugin-react": "^7.30.1", "eslint-plugin-react-hooks": "^4.6.0", - "pyodide": "0.25.1", + "pyodide": "0.26.0", "typescript": "^4.9.4", "vitest": "^1.2.2" }, diff --git a/packages/kernel/py/stlite-server/poetry.lock b/packages/kernel/py/stlite-server/poetry.lock index 233050973..3f71fe1af 100644 --- a/packages/kernel/py/stlite-server/poetry.lock +++ b/packages/kernel/py/stlite-server/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. 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b/packages/kernel/src/kernel.ts @@ -30,7 +30,7 @@ import { assertStreamlitConfig } from "./types"; // https://github.com/pyodide/pyodide/pull/1859 // https://pyodide.org/en/stable/project/changelog.html#micropip import STLITE_SERVER_WHEEL from "!!file-loader?name=pypi/[name].[ext]&context=.!../py/stlite-server/dist/stlite_server-0.1.0-py3-none-any.whl"; // TODO: Extract the import statement to an auto-generated file like `_pypi.ts` in JupyterLite: https://github.com/jupyterlite/jupyterlite/blob/f2ecc9cf7189cb19722bec2f0fc7ff5dfd233d47/packages/pyolite-kernel/src/_pypi.ts -import STREAMLIT_WHEEL from "!!file-loader?name=pypi/[name].[ext]&context=.!../py/streamlit/lib/dist/streamlit-1.35.0-cp311-none-any.whl"; +import STREAMLIT_WHEEL from "!!file-loader?name=pypi/[name].[ext]&context=.!../py/streamlit/lib/dist/streamlit-1.35.0-cp312-none-any.whl"; // Ref: https://github.com/streamlit/streamlit/blob/1.12.2/frontend/src/lib/UriUtil.ts#L32-L33 const FINAL_SLASH_RE = /\/+$/; diff --git a/packages/kernel/src/worker-runtime.ts b/packages/kernel/src/worker-runtime.ts index 66a9e9c29..3cc8875d4 100644 --- a/packages/kernel/src/worker-runtime.ts +++ b/packages/kernel/src/worker-runtime.ts @@ -514,7 +514,7 @@ server.start() _headers: PyProxy, _body: PyProxy ) => { - const headers = _headers.toJs(); + const headers = new Map(_headers.toJs()); // Pyodide converts dict to LiteralMap, not Map, which can't be cloned and sent to the main thread. So we convert it to Map here. Ref: https://github.com/pyodide/pyodide/pull/4576 const body = _body.toJs(); console.debug({ statusCode, headers, body }); diff --git a/packages/kernel/src/worker.ts b/packages/kernel/src/worker.ts index fcc44d3f4..6be09cef7 100644 --- a/packages/kernel/src/worker.ts +++ b/packages/kernel/src/worker.ts @@ -1,6 +1,6 @@ import { startWorkerEnv } from "./worker-runtime"; self.onmessage = startWorkerEnv( - "https://cdn.jsdelivr.net/pyodide/v0.25.1/full/pyodide.js", + "https://cdn.jsdelivr.net/pyodide/v0.26.0/full/pyodide.js", self.postMessage ); diff --git a/requirements.dev.txt b/requirements.dev.txt index 825238ff2..05d622fc9 100644 --- a/requirements.dev.txt +++ b/requirements.dev.txt @@ -1,3 +1,3 @@ build poetry -pyodide-build==0.23.4 +pyodide-build==0.26.0 diff --git a/yarn.lock b/yarn.lock index 67685fb18..b729ca3c3 100644 --- a/yarn.lock +++ b/yarn.lock @@ -6851,11 +6851,6 @@ bare-path@^2.0.0, bare-path@^2.1.0: dependencies: bare-os "^2.1.0" -base-64@^1.0.0: - version "1.0.0" - resolved "https://registry.yarnpkg.com/base-64/-/base-64-1.0.0.tgz#09d0f2084e32a3fd08c2475b973788eee6ae8f4a" - integrity sha512-kwDPIFCGx0NZHog36dj+tHiwP4QMzsZ3AgMViUBKI0+V5n4U0ufTCUMhnQ04diaRI8EX/QcPfql7zlhZ7j4zgg== - base16@^1.0.0: version "1.0.0" resolved "https://registry.yarnpkg.com/base16/-/base16-1.0.0.tgz#e297f60d7ec1014a7a971a39ebc8a98c0b681e70" @@ -18709,12 +18704,11 @@ pure-color@^1.2.0: resolved "https://registry.yarnpkg.com/pure-color/-/pure-color-1.3.0.tgz#1fe064fb0ac851f0de61320a8bf796836422f33e" integrity sha512-QFADYnsVoBMw1srW7OVKEYjG+MbIa49s54w1MA1EDY6r2r/sTcKKYqRX1f4GYvnXP7eN/Pe9HFcX+hwzmrXRHA== -pyodide@0.25.1: - version "0.25.1" - resolved "https://registry.yarnpkg.com/pyodide/-/pyodide-0.25.1.tgz#80114f84b8eaf7e7dc53477b96d71fb7b1bbf6ae" - integrity sha512-y0nJ/fLA3bxD2iZRzvVTbP2O+wp4Ewm2wThfV4HF0BytQ6hsoqTJFLNY4usLOcCVBrK8TTWqFqrmsVPzHe4rsw== +pyodide@0.26.0: + version "0.26.0" + resolved "https://registry.yarnpkg.com/pyodide/-/pyodide-0.26.0.tgz#8b2845c55118f786a7d0250401257810cdced530" + integrity sha512-6thkjsvbvebqNlb2mtkVF5ODcWUYT0lVuOgww4cfEJFVM0J3MtTNPznVahVDzKOdCwSWvCfAqeEqP0wR6jj5uQ== dependencies: - base-64 "^1.0.0" ws "^8.5.0" q@^1.1.2: