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packages.yml
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# This is a basic workflow to help you get started with Actions
name: ghcr
# Controls when the workflow will run
on:
# Triggers the workflow on push or pull request events but only for the master branch
push:
branches: [ master ]
pull_request:
branches: [ master ]
tags:
- v*
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
env:
IMAGE_NAME: snakemake_rna-seq
# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
# This workflow contains a single job called "build"
build:
# The type of runner that the job will run on
runs-on: ubuntu-latest
permissions:
packages: write
contents: read
# Steps represent a sequence of tasks that will be executed as part of the job
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-
uses: actions/checkout@v2
-
name: Build image
run: docker build docker/. --tag $IMAGE_NAME --label "runnumber=${GIRHUB_RUN_ID}"
-
name: Log in to registry
run: echo "${{ secrets.MY_GITHUB_TOKEN }}" | docker login ghcr.io -u ${{ github.actor }} --password-stdin
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name: Push image
run: |
IMAGE_ID=ghcr.io/${{ github.repository_owner }}/$IMAGE_NAME
IMAGE_ID=$(echo $IMAGE_ID | tr '[A-Z]' '[a-z]')
VERSION=$(echo "${{ github.ref }}" | sed -e 's,.*/\(.*\),\1,')
[[ "${{ github.ref }}" == "refs/tags/"* ]] && VERSION=$(echo $VERSION | sed -e 's/^v//')
[ "$VERSION" == "master" ] && VERSION=latest
echo IMAGE_ID=$IMAGE_ID
echo VERSION=$VERSION
docker tag $IMAGE_NAME $IMAGE_ID:$VERSION
docker push $IMAGE_ID:$VERSION