test.yaml

# Based on github template: https://github.com/actions/starter-workflows/blob/main/ci/python-package.yml

name: Tests

on:
  schedule:
    - cron: '0 9 * * 1' # run every Monday at 9 AM UTC (3 am PST)
  push:
  pull_request:
  workflow_dispatch:

jobs:
  build:
    name: ${{ matrix.python-version }}, ${{ matrix.os }}
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ ubuntu-latest, macos-latest, windows-latest ]
        python-version: ['3.10', '3.9']  # ['3.8', '3.x']
        exclude:
          # tests with ubuntu-latest, python latest
          # are executed by build_docs.yaml
          - os: ubuntu-latest
            python-version: 3.10

    steps:
    - name: Checkout source
      uses: actions/checkout@v2
      with:
        persist-credentials: false

    - name: Fetch all Git tags
      run: git fetch --prune --unshallow --tags

    - name: Cache Miniconda
      uses: actions/cache@v2.1.0
      env:
        # Increase this value to reset cache if environment.yml has changed
        CACHE_NUMBER: 0
      with:
        path: ~/conda_pkgs_dir
        key: ${{ runner.os }}-${{ matrix.python-version }}-${{
             matrix.run-type }}-${{ env.CACHE_NUMBER }}-${{
             hashFiles('ci/test_environment.yaml') }}

    - name: Setup conda environment
      uses: conda-incubator/setup-miniconda@v2
      with:
        auto-update-conda: true
        activate-environment: mfsetup_ci
        environment-file: ci/test_environment.yaml
        python-version: ${{ matrix.python-version }}
        #condarc-file: ci/example-condarc.yml
        auto-activate-base: false
        use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!

    - name: Conda info
      shell: bash -l {0}
      run: conda info
    - name: Add executables to path
      shell: bash
      run: |
        if [[ ! -d "$HOME/.local/bin" ]]; then
            mkdir -p "$HOME/.local/bin";
        fi
        # copy modflow bins to local dir to add to PATH later
        if [ "$RUNNER_OS" == "Windows" ]; then
            d="win"
        elif [ "$RUNNER_OS" == "macOS" ]; then
            d="mac"
        elif [ "$RUNNER_OS" == "Linux" ]; then
            d="linux"
        else
            d="unexpectedos"
            exit 1
        fi
        cp -r bin/$d/. "$HOME/.local/bin/"
        echo "$HOME/.local/bin" >> $GITHUB_PATH
        echo $GITHUB_PATH
    - name: Test install from git
      shell: bash -l {0}
      run: |
        pip install git+https://github.com/aleaf/modflow-setup@develop
        cd ..
        python -c "import mfsetup"
        cd modflow-setup
    - name: Install Modflow-setup and ipykernel
      shell: bash -l {0}
      run: |
        pip install -e .
        python -m ipykernel install --user --name mfsetup_ci --display-name "mfsetup_ci"
    - name: Conda list
      shell: bash -l {0}
      run: conda list
    #- name: Lint with flake8
    #  run: |
    #    # stop the build if there are Python syntax errors or undefined names
    #    flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
    #    # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
    #    flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
    - name: Run tests and upload coverage
      shell: bash -l {0}
      run: |
        coverage run -m pytest -v --durations=20
        coverage report -m
        codecov