diff --git a/data/vtlib/pib_reanalysis.json b/data/vtlib/pib_reanalysis.json index 4b00a6a2..5bef5d2c 100644 --- a/data/vtlib/pib_reanalysis.json +++ b/data/vtlib/pib_reanalysis.json @@ -104,6 +104,13 @@ "-l", {"subst":"pib_reanalysis_collate_compression","required":true,"ifnull":["0"]}, "--threads", {"subst":"pib_reanalysis_collate_threads","required":true,"ifnull":4}, {"subst":"pib_reanalysis_collate_extra_flags", "required":false}, + {"subst":"pib_collate_tempfile_flag","ifnull":{ + "subst_constructor":{ + "vals":[ + "-T", + {"subst":"pib_collate_tempfile_prefix","required":false, "ifnull":{"subst_constructor":{"vals":[ {"subst":"qc_check_id_run"}, {"subst":"s1_lane"}, "collate_tmp"], "postproc":{"op":"concat","pad":"_"}}}} + ] + }}}, "-" ] } diff --git a/t/10-vtfp-vtfile_v2.t b/t/10-vtfp-vtfile_v2.t index 008200bf..f276a7af 100644 --- a/t/10-vtfp-vtfile_v2.t +++ b/t/10-vtfp-vtfile_v2.t @@ -10,7 +10,6 @@ use File::Temp qw(tempdir); use Cwd; my $tdir = tempdir(CLEANUP => 1); -warn q[tdir: ], $tdir; my $odir = getcwd(); my $test = Test::Cmd->new( prog => $odir.'/bin/vtfp.pl', workdir => q());