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test_output5.tab
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17 lines (17 loc) · 5.08 KB
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STR_marker STR_position STR_motif STR_genotype_structure STR_genotype STR_core_seq Allele_coverage Alleles_ratio Reads_Distribution(consensused) STR_depth Full_seq Variations
STR_test1_PERFECT_7mer_5copies test1_PERFECT_7mer_5copies:31-65 [TCATCGG]n 7[TCATCGG]5,0 5 TCATCGGTCATCGGTCATCGGTCATCGGTCATCGG 100% - 5:5 5 ACTGAGTCTGACGATCGTACGATCGATCGATCATCGGTCATCGGTCATCGGTCATCGGTCATCGGGCTAGCTAGCTAGCTGACTGACTGACTGAC -
STR_test2_PERFECT_12mer_7copies test2_PERFECT_12mer_7copies:31-114 [ACCCCTCAGGGT]n 12[ACCCCTCAGGGT]7,0 7 ACCCCTCAGGGTACCCCTCAGGGTACCCCTCAGGGTACCCCTCAGGGTACCCCTCAGGGTACCCCTCAGGGTACCCCTCAGGGT 100% - 7:7 7 ACTGAGTCTGACGATCGTACGATCGATCGAACCCCTCAGGGTACCCCTCAGGGTACCCCTCAGGGTACCCCTCAGGGTACCCCTCAGGGTACCCCTCAGGGTACCCCTCAGGGTGCTAGCTAGCTAGCTGACTGACTGACTGAC -
STR_test3_LONG_36mer_20copies test3_LONG_36mer_20copies:31-730 [TGACTATATCCGCAAATGAAGGCTGTTCTCTGACA]n 35[TGACTATATCCGCAAATGAAGGCTGTTCTCTGACA]20,0 20 TGACTATATCCGCAAATGAAGGCTGTTCTCTGACATGACTATATCCGCAAATGAAGGCTGTTCTCTGACA... (x20) 100% - 20:20 20 ACTGAGTCTGACGATCGTACGATCGATCGATGACTATATCCGCAAATGAAGGCTGTTCTCTGACATGACTATATCCGCAAATGAAGGCTGTTCTCTGACATGACTATATCCGCAAATGAAGGCTGTTCTCTGACATGACTATATCCGCAAATGAAGGCTGTTCTCTGACATGACTATATCCGCAAATGAAGGCTGTTCTCTGACATGACTATATCCGCAAATGAAGGCTGTTCTCTGACATGACTATATC...ATATCCGCAAATGAAGGCTGTTCTCTGACATGACTATATCCGCAAATGAAGGCTGTTCTCTGACATGACTATATCCGCAAATGAAGGCTGTTCTCTGACATGACTATATCCGCAAATGAAGGCTGTTCTCTGACATGACTATATCCGCAAATGAAGGCTGTTCTCTGACAGCTAGCTAGCTAGCTGACTGACTGACTGAC -
STR_test4_INTERRUPTED_7mer_11copies test4_INTERRUPTED_7mer_11copies:31-115 [TCATCGG]n 7[TCATCGG]12,1 12.14 TCATCGGTCATCGGTCATCGGTCATCGGTCATCGGTCATAGGTCATCGGTCATCGGTCATCGGTCATCGGTCATCAGGTCATCGG 96% - 12:12 12 ACTGAGTCTGACGATCGTACGATCGATCGATCATCGGTCATCGGTCATCGGTCATCGGTCATCGGTCATAGGTCATCGGTCATCGGTCATCGGTCATCGGTCATCAGGTCATCGGGCTAGCTAGCTAGCTGACTGACTGACTGAC 6:5:C>A;11:6:G>A;12:0:ins(G)
STR_test5_COMPOUND_ATG10_CAG8 test5_COMPOUND_ATG10_CAG8:31-63 [ATG]n 3[ATG]11,0 11 ATGATGATGATGATGATGATGATGATGATGATG 100% - 11:11 11 ACTGAGTCTGACGATCGTACGATCGATCGAATGATGATGATGATGATGATGATGATGATGATGCAGCAGCAGCAGCAGCAGCAGCAGGCTAGC -
STR_test6_NESTED_long20_short4 test6_NESTED_long20_short4:31-130 [TGCTGATCGTAGCTAGCTGA]n 20[TGCTGATCGTAGCTAGCTGA]5,0 5 TGCTGATCGTAGCTAGCTGATGCTGATCGTAGCTAGCTGATGCTGATCGTAGCTAGCTGATGCTGATCGTAGCTAGCTGATGCTGATCGTAGCLAGCTGA 100% - 5:5 5 ACTGAGTCTGACGATCGTACGATCGATCGATGCTGATCGTAGCTAGCTGATGCTGATCGTAGCTAGCTGATGCTGATCGTAGCTAGCTGATGCTGATCGTAGCTAGCTGATGCTGATCGTAGCLAGCTGATGCTTGCTTGCTTGCTTGCTTGCTTGCTTG -
STR_test6_NESTED_long20_short4 test6_NESTED_long20_short4:129-176 [GATGCTTGCTTGCTTG]n 16[GATGCTTGCTTGCTTG]3,0 3 GATGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTG 100% - 3:3 3 GTAGCTAGCTGATGCTGATCGTAGCLAGCTGATGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTGCTAGCTAGCTAGCTGACTGACTGACTG -
STR_test7_HOMOPOLYMER_A20 test7_HOMOPOLYMER_A20:31-50 [AA]n 2[AA]10,0 10 AAAAAAAAAAAAAAAAAAAA 100% - 10:20 20 ACTGAGTCTGACGATCGTACGATCGATCGAAAAAAAAAAAAAAAAAAAAAGCTAGCTAGCTAGCTGACTGACTGACTGAC -
STR_test8_OVERLAPPING_ATAT_12copies test8_OVERLAPPING_ATAT_12copies:31-80 [ATAT]n 4[ATAT]12,2 12.5 ATATATATATATATATATATATATATATATATATATATATATATATATAT 100% - 12:25 25 ACTGAGTCTGACGATCGTACGATCGATCGAATATATATATATATATATATATATATATATATATATATATATATATATATGCTAGCTAGCTAGCTGACTGACTGACTGAC -
STR_test9_PALINDROMIC_GCTAGC_6copies test9_PALINDROMIC_GCTAGC_6copies:31-66 [GCTAGC]n 6[GCTAGC]6,0 6 GCTAGCGCTAGCGCTAGCGCTAGCGCTAGCGCTAGC 100% - 6:6 6 ACTGAGTCTGACGATCGTACGATCGATCGAGCTAGCGCTAGCGCTAGCGCTAGCGCTAGCGCTAGCGCTAGCTAGCTAGCTGACTGACTGACTGAC -
STR_test10_HIGH_GC_GCGGCG_15copies test10_HIGH_GC_GCGGCG_15copies:31-102 [GCGGCG]n 6[GCGGCG]12,0 12 GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCG 100% - 12:24 24 ACTGAGTCTGACGATCGTACGATCGATCGAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCTAGCTAGCTAGCTGACTGACTGACTGAC -
STR_test11_SNP_inside_motif test11_SNP_inside_motif:31-86 [ACGTGCA]n 7[ACGTGCA]8,0 8 ACGTGCAACGTGCAACGAGCAACGTGCAACGTGCAACGTGCAACGTGCAACGTGCA 100% - 8:8 8 ACTGAGTCTGACGATCGTACGATCGATCGAACGTGCAACGTGCAACGAGCAACGTGCAACGTGCAACGTGCAACGTGCAACGTGCAGCTAGCTAGCTAGCTGACTGACTGACTGAC -
STR_test12_LONG_IMPERFECT_indel test12_LONG_IMPERFECT_indel:31-262 [TTGACCTGAGGCTTACGATCGTACGATCG]n 29[TTGACCTGAGGCTTACGATCGTACGATCG]8,0 8 TTGACCTGAGGCTTACGATCGTACGATCGTTGACCTGAGGCTTACGATCGTACGATCGTTGACCTGAGGC... (x8) 100% - 8:8 8 ACTGAGTCTGACGATCGTACGATCGATCGATTGACCTGAGGCTTACGATCGTACGATCGTTGACCTGAGGCTTACGATCGTACGATCGTTGACCTGAGGCTTACGATCGTACGATCGTTGACCTGAGGCTTACGATCGTACGATCGTTGACCTGAGGCTTACGATCGTACGATCGTTGACCTGAGGCTTACGATCGTACGATCGTTGACCTGAGGCTTACGATCGTACGATCGTTGACCTGAGGCTTACGATCGTACGATCGTTGACCTGAGTTACGATCGTACGATCGTTG -
STR_test12_LONG_IMPERFECT_indel test12_LONG_IMPERFECT_indel:274-289 [TACG]n 4[TACG]4,0 4 TACGATCGTACGATCG 100% - 4:4 4 GCTTACGATCGTACGATCGTTGACCTGAGTTACGATCGTACGATCGTTGACCTGAGGCTTACGATCGTACGATCGT -
STR_test12_LONG_IMPERFECT_indel test12_LONG_IMPERFECT_indel:303-318 [TACG]n 4[TACG]4,0 4 TACGATCGTACGATCG 100% - 4:4 4 TTACGATCGTACGATCGTTGACCTGAGGCTTACGATCGTACGATCGTTGACCTGAGGCTTACGATCGTACGATCGG -
STR_test12_LONG_IMPERFECT_indel test12_LONG_IMPERFECT_indel:332-347 [TACG]n 4[TACG]4,0 4 TACGATCGTACGATCG 100% - 4:4 4 TTACGATCGTACGATCGTTGACCTGAGGCTTACGATCGTACGATCGGCTAGCTAGCTAGCTGACTGACTGACTGAC -