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Unknown option -d in output_reports.pl #49

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dinhe878 opened this issue Nov 25, 2021 · 1 comment

dinhe878 commented Nov 25, 2021

Hi,

I encountered an issue

[Thu Nov 25 09:32:38 2021] Running: /services/tools/perl/5.20.1/bin/perl /services/tools/metaerg/1.2.3/bin/output_reports.pl -d /home/people/dinghe/ku_00039/people/dinghe/metaergDB/db -g metaerg_out/data/all.gff -o metaerg_out -f metaerg_out/GAGA-0336.fna
20 use File::Path qw(make_path remove_tree);
Unknown option: d

It seems that there isn't an option (-d) for specifying custom database path in this perl script output_reports.pl.

Could you update the script to fix this bug?

Many thanks!

BioGavin commented Apr 19, 2023

I encountered the same problem with docker.

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