test.yml

name: Test Pull Request
on: [pull_request]

jobs:
  build:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: [3.9, '3.10', '3.11']

    steps:
      - uses: actions/checkout@v2
      - name: Testing with version ${{ matrix.python-version }}
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install Python requirements
        run: |
          python -m pip install --upgrade pip
          pip install -r requirements.txt
          pip install pytest
      - name: Install Java
        uses: actions/setup-java@v4
        with:
          distribution: 'oracle'
          java-version: '21'
      - name: Install RNAFold
        run: |
          wget https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_6_x/ViennaRNA-2.6.4.tar.gz
          tar -zxvf ViennaRNA-2.6.4.tar.gz
          cd ViennaRNA-2.6.4
          ./configure
          make
          sudo make install
          pwd
      - name: Run Tests
        run: |
          pwd
          ls
          echo "about to echo the path"
          echo "1111111"
          ls /home/runner/work/RNAFoldAssess/RNAFoldAssess/
          # /home/runner/work/RNAFoldAssess/RNAFoldAssess/ViennaRNA-2.6.4/bin/RNAfold GUAUCCACGCGAGUAGCGUGGAUGCAAAAAAAUAAUAAUAUGGGUGUGGAACUACAGGCAGUAGGGGAAACCCUACUGAACUACCUGCCACACCCUAAGUUAUUAUUUUAC
          pip install -e .
          # pytest /home/runner/work/RNAFoldAssess/RNAFoldAssess/tests