ref_based_inputs.json

{
	"project_name": "Test_Soy1066",
	"workflow_path": "/scratch/yenc/projects/AlleleCatalog",
	"input_files": [
		"/scratch/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr01.vcf.gz",
		"/scratch/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr02.vcf.gz",
		"/scratch/yenc/projects/AlleleCatalog/data/test_Soy1066/unimpute_data/test_Soy1066_Chr03.vcf.gz"
	],
	"reference_files": [
		"/scratch/yenc/projects/AlleleCatalog/data/Soy1066/Bcftools_view_reheader/Soy1066_Chr01.vcf.gz",
		"/scratch/yenc/projects/AlleleCatalog/data/Soy1066/Bcftools_view_reheader/Soy1066_Chr02.vcf.gz",
		"/scratch/yenc/projects/AlleleCatalog/data/Soy1066/Bcftools_view_reheader/Soy1066_Chr03.vcf.gz"
	],
	"chromosomes": [
		"Chr01",
		"Chr02",
		"Chr03"
	],
	"beagle_window": 100,
	"metadata_file": "/scratch/yenc/projects/AlleleCatalog/data/test_Soy1066/Soy1066_allele_line_info.txt",
	"genome_version": "Wm82.a2.v1",
	"gff_file": "/scratch/yenc/projects/AlleleCatalog/data/test_Soy1066/Wm82.a2.v1.genes.tiny.gff",
	"gff_category": "gene",
	"gff_key": "Name=",
	"output_folder": "/scratch/yenc/projects/AlleleCatalog/output/Test_Soy1066/",
	"memory": 100,
	"threads": 4
}