o2 File transfer.txt

how to transfer files to o2 server:
https://wiki.rc.hms.harvard.edu/display/O2/

submit job script:
sbatch myjob.sh

#0 create interactive session
srun --pty -p interactive --mem 8000M -t 0-01:00 /bin/bash

#1 create job:
sbatch -p short -t 8:00 --mem=8000 myjob.sh

#2 upload BIGDIR:
rsync -av -e ssh BIGDIR nw92@transfer.rc.hms.harvard.edu:/n/scratch2/nw92/
scp -r BIGDIR nw92@transfer.rc.hms.harvard.edu:/n/scratch2/nw92/


how to use o2:
https://wiki.rc.hms.harvard.edu/display/O2/Using+Slurm+Basic#UsingSlurmBasic-FilesystemResources


how to use rsync:
https://www.tecmint.com/rsync-local-remote-file-synchronization-commands/

Installs:

#conda activate pytorch

conda install -c anaconda scikit-learn
conda install -c anaconda pandas
pip install torchsummary
conda install -c conda-forge tensorflow
conda install -c conda-forge tensorboardx
conda install pytorch torchvision cudatoolkit=10.0 -c pytorch