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DESCRIPTION
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Package: lncGSEA
Type: Package
Title: lncRNA Associated Gene Set Enrichement Analysis
Version: 0.1.0
Author:
c(person(given = "Yanan",
family = "Ren",
role = c("aut", "cre"),
email = "renxx275@umn.edu"),
person(given = "Tingyou",
family = "Wang",
role = "aut",
email = "tywang@umn.edu"),
person(given = "Leah C.",
family = "Anderton",
role = "aut",
email = "leahcanderton@cedarville.edu"),
person(given = "Qi",
family = "Cao",
role = "aut",
email = "qi.cao@northwestern.edu"
),
person(given = "Rendong",
family = "Yang",
role = "aut",
email = "yang4414@umn.edu"
)
)
Maintainer: Yanan Ren <renxx275@umn.edu>
Description: An R Package to infer lncRNA associated pathways from Large-scale
cancer transcriptome sequencing data by using two metrics to link
gene signatures with a lncRNA expression in tumor patient samples
from the TCGA study. It is capable of identifying enriched pathways
regulated by lncRNAs in human cancers.
Depends: R (>= 3.3.0)
Imports:
data.table,
dplyr,
stringr,
tidyr,
tibble,
fgsea (>= 1.10.1),
ggplot2 (>= 2.2.0),
RColorBrewer,
ggrepel,
R.utils,
bit64
Suggests:
knitr,
rmarkdown,
testthat
License: MIT + file LICENCE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
VignetteBuilder: knitr