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🚀 Automatically rebuilt derived files (OBOFoundry#2580)
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‎_config.yml

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@@ -6596,26 +6596,29 @@ ontologies:
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title: INCF KnowledgeSpace Portal
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url: https://knowledge-space.org/index.php/pages/view/UBERON:0000061
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build:
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checkout: svn --ignore-externals co http://svn.code.sf.net/p/obo/svn/uberon/trunk
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checkout: git clone https://github.com/obophenotype/uberon.git
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email_cc: cjmungall@lbl.gov
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infallible: 1
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method: vcs
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system: svn
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system: git
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canonical: uberon.owl
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contact:
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email: cjmungall@lbl.gov
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github: cmungall
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label: Chris Mungall
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orcid: 0000-0002-6601-2165
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dependencies:
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- id: bfo
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- id: bspo
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- id: chebi
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subset: uberon/chebi_import.owl
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- id: cl
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subset: uberon/cl_import.owl
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- id: envo
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- id: go
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subset: uberon/go_import.owl
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- id: nbo
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- id: ncbitaxon
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- id: omo
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- id: pato
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- id: pr
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subset: uberon/pr_import.owl
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- id: ro
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depicted_by: https://raw.githubusercontent.com/jmcmurry/closed-illustrations/master/logos/uberon-logos/uberon_logo_black-banner.png
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description: An integrated cross-species anatomy ontology covering animals and bridging
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multiple species-specific ontologies
@@ -6654,43 +6657,24 @@ ontologies:
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ontology_purl: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
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page: https://github.com/INCATools/ontology-development-kit/issues/50
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title: Uberon base ontology
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- description: Uberon extended
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id: uberon/ext.owl
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mireots_from: cl
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ontology_purl: http://purl.obolibrary.org/obo/uberon/ext.owl
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title: Uberon edition that includes subsets of other ontologies and axioms connecting
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to them
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type: owl:Ontology
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- description: Uberon edition that excludes external ontologies and most relations
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format: obo
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id: uberon/basic.obo
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ontology_purl: http://purl.obolibrary.org/obo/uberon/basic.obo
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id: uberon/uberon-basic.obo
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ontology_purl: http://purl.obolibrary.org/obo/uberon/uberon-basic.obo
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title: Uberon basic
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type: obo-basic-ontology
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- connects:
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- id: uberon
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- id: zfa
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description: Taxonomic equivalence axioms connecting zebrafish-specific classes
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to generic uberon counterparts
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id: uberon/bridge/uberon-bridge-to-zfa.owl
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ontology_purl: http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-zfa.owl
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page: https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies
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title: Uberon bridge to ZFA
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type: BridgeOntology
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- connects:
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- id: uberon
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- id: ma
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description: Taxonomic equivalence axioms connecting adult mouse specific classes
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to generic uberon counterparts
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id: uberon/bridge/uberon-bridge-to-ma.owl
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ontology_purl: http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.owl
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page: https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies
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title: Uberon bridge to MA
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type: BridgeOntology
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- description: Extended uberon plus all metazoan ontologies
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- description: Uberon plus all metazoan ontologies
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id: uberon/collected-metazoan.owl
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ontology_purl: http://purl.obolibrary.org/obo/uberon/collected-metazoan.owl
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page: https://obophenotype.github.io/uberon/combined_multispecies/
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taxon: Metazoa
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title: Uberon collected metazoan ontology
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type: MergedOntology
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- description: Uberon and all metazoan ontologies with redundant species-specific
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terms removed
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id: uberon/composite-metazoan.owl
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ontology_purl: http://purl.obolibrary.org/obo/uberon/composite-metazoan.owl
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page: https://github.com/obophenotype/uberon/wiki/Multi-species-composite-ontologies
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page: https://obophenotype.github.io/uberon/combined_multispecies/
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taxon: Metazoa
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title: Uberon composite metazoan ontology
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type: MergedOntology
@@ -6705,8 +6689,8 @@ ontologies:
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- emapa
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- ehdaa2
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ontology_purl: http://purl.obolibrary.org/obo/uberon/composite-vertebrate.owl
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page: https://github.com/obophenotype/uberon/wiki/Multi-species-composite-ontologies
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taxon: Metazoa
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page: https://obophenotype.github.io/uberon/combined_multispecies/
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taxon: Vertebrata
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title: Uberon composite vertebrate ontology
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type: MergedOntology
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publications:

‎registry/ontologies.jsonld

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@@ -9221,11 +9221,10 @@
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}
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],
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"build": {
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"checkout": "svn --ignore-externals co http://svn.code.sf.net/p/obo/svn/uberon/trunk",
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"checkout": "git clone https://github.com/obophenotype/uberon.git",
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"email_cc": "cjmungall@lbl.gov",
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"infallible": 1,
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"method": "vcs",
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"system": "svn"
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"system": "git"
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},
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"canonical": "uberon.owl",
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"contact": {
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},
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"dependencies": [
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{
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"id": "chebi",
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"subset": "uberon/chebi_import.owl"
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"id": "bfo"
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},
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{
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"id": "cl",
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"subset": "uberon/cl_import.owl"
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"id": "bspo"
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},
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{
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"id": "chebi"
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},
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{
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"id": "cl"
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},
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{
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"id": "envo"
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},
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{
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"id": "go"
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},
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{
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"id": "nbo"
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},
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{
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"id": "ncbitaxon"
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},
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{
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"id": "omo"
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},
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{
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"id": "go",
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"subset": "uberon/go_import.owl"
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"id": "pato"
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},
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{
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"id": "pr"
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},
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{
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"id": "pr",
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"subset": "uberon/pr_import.owl"
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"id": "ro"
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}
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],
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"depicted_by": "https://raw.githubusercontent.com/jmcmurry/closed-illustrations/master/logos/uberon-logos/uberon_logo_black-banner.png",
@@ -9302,59 +9321,28 @@
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"page": "https://github.com/INCATools/ontology-development-kit/issues/50",
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"title": "Uberon base ontology"
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},
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{
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"description": "Uberon extended",
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"id": "uberon/ext.owl",
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"mireots_from": "cl",
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"ontology_purl": "http://purl.obolibrary.org/obo/uberon/ext.owl",
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"title": "Uberon edition that includes subsets of other ontologies and axioms connecting to them",
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"type": "owl:Ontology"
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},
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{
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"description": "Uberon edition that excludes external ontologies and most relations",
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"format": "obo",
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"id": "uberon/basic.obo",
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"ontology_purl": "http://purl.obolibrary.org/obo/uberon/basic.obo",
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"id": "uberon/uberon-basic.obo",
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"ontology_purl": "http://purl.obolibrary.org/obo/uberon/uberon-basic.obo",
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"title": "Uberon basic",
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"type": "obo-basic-ontology"
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},
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{
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"connects": [
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{
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"id": "uberon"
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},
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{
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"id": "zfa"
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}
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],
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"description": "Taxonomic equivalence axioms connecting zebrafish-specific classes to generic uberon counterparts",
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"id": "uberon/bridge/uberon-bridge-to-zfa.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-zfa.owl",
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"page": "https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies",
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"title": "Uberon bridge to ZFA",
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"type": "BridgeOntology"
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},
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{
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"connects": [
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{
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"id": "uberon"
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},
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{
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"id": "ma"
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}
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],
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"description": "Taxonomic equivalence axioms connecting adult mouse specific classes to generic uberon counterparts",
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"id": "uberon/bridge/uberon-bridge-to-ma.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.owl",
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"page": "https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies",
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"title": "Uberon bridge to MA",
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"type": "BridgeOntology"
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"description": "Uberon plus all metazoan ontologies",
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"id": "uberon/collected-metazoan.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/uberon/collected-metazoan.owl",
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"page": "https://obophenotype.github.io/uberon/combined_multispecies/",
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"taxon": "Metazoa",
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"title": "Uberon collected metazoan ontology",
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"type": "MergedOntology"
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},
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{
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"description": "Extended uberon plus all metazoan ontologies",
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"description": "Uberon and all metazoan ontologies with redundant species-specific terms removed",
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"id": "uberon/composite-metazoan.owl",
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"ontology_purl": "http://purl.obolibrary.org/obo/uberon/composite-metazoan.owl",
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"page": "https://github.com/obophenotype/uberon/wiki/Multi-species-composite-ontologies",
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"page": "https://obophenotype.github.io/uberon/combined_multispecies/",
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"taxon": "Metazoa",
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"title": "Uberon composite metazoan ontology",
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"type": "MergedOntology"
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"ehdaa2"
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],
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"ontology_purl": "http://purl.obolibrary.org/obo/uberon/composite-vertebrate.owl",
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"page": "https://github.com/obophenotype/uberon/wiki/Multi-species-composite-ontologies",
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"taxon": "Metazoa",
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"page": "https://obophenotype.github.io/uberon/combined_multispecies/",
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"taxon": "Vertebrata",
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"title": "Uberon composite vertebrate ontology",
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"type": "MergedOntology"
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}

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