diff --git a/docs/examples/examples.ipynb b/docs/examples/examples.ipynb index 5a7b991..d75893b 100644 --- a/docs/examples/examples.ipynb +++ b/docs/examples/examples.ipynb @@ -400,7 +400,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Cluster the sequences using cd-hit." + "Cluster the sequences using cd-hit. [Path](#pathlib) objects can also be used in arguments." ] }, { diff --git a/pycdhit/__init__.py b/pycdhit/__init__.py index bcd18ff..3cae3a9 100644 --- a/pycdhit/__init__.py +++ b/pycdhit/__init__.py @@ -4,7 +4,7 @@ from ._commands import * # noqa: F403 from ._io import * # noqa: F403 -VERSION = "0.10.0" +VERSION = "0.11.0" __all__ = [ # noqa: F405 "CommandBase", diff --git a/tests/test_commands.py b/tests/test_commands.py index 77e8f39..724ead3 100644 --- a/tests/test_commands.py +++ b/tests/test_commands.py @@ -30,7 +30,7 @@ def test_cd_hit(cdhit_temp_files): in_path, out_path = cdhit_temp_files in_path.write_text(FASTA) try: - res = _commands.cd_hit_est(i=str(in_path), o=str(out_path)) + res = _commands.cd_hit_est(i=in_path, o=out_path) assert isinstance(res, CompletedProcess) except (CalledProcessError, FileNotFoundError): pass