thesis.tex

%%% The main file. It contains definitions of basic parameters and includes all other parts.

% Meta-data of your thesis (please edit)
\input metadata.tex

% Generate metadata in XMP format for use by the pdfx package
\input xmp.tex

%% Settings for single-side (simplex) printing
% Margins: left 40mm, right 25mm, top and bottom 25mm
% (but beware, LaTeX adds 1in implicitly)
\documentclass[12pt,a4paper]{report}
\setlength\textwidth{145mm}
\setlength\textheight{247mm}
\setlength\oddsidemargin{15mm}
\setlength\evensidemargin{15mm}
\setlength\topmargin{0mm}
\setlength\headsep{0mm}
\setlength\headheight{0mm}
% \openright makes the following text appear on a right-hand page
\let\openright=\clearpage

%% Settings for two-sided (duplex) printing
% \documentclass[12pt,a4paper,twoside,openright]{report}
% \setlength\textwidth{145mm}
% \setlength\textheight{247mm}
% \setlength\oddsidemargin{14.2mm}
% \setlength\evensidemargin{0mm}
% \setlength\topmargin{0mm}
% \setlength\headsep{0mm}
% \setlength\headheight{0mm}
% \let\openright=\cleardoublepage

%% If the thesis has no printed version, symmetric margins look better
% \documentclass[12pt,a4paper]{report}
% \setlength\textwidth{145mm}
% \setlength\textheight{247mm}
% \setlength\oddsidemargin{10mm}
% \setlength\evensidemargin{10mm}
% \setlength\topmargin{0mm}
% \setlength\headsep{0mm}
% \setlength\headheight{0mm}
% \let\openright=\clearpage

%% Generate PDF/A-2u
\usepackage[a-2u]{pdfx}

%% Prefer Latin Modern fonts
\usepackage{lmodern}
% If we are not using LuaTeX, we need to set up character encoding:
\usepackage{iftex}
\ifpdftex
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{textcomp}
\fi

%% Further useful packages (included in most LaTeX distributions)
\usepackage{amsmath}        % extensions for typesetting of math
\usepackage{amsfonts}       % math fonts
\usepackage{amsthm}         % theorems, definitions, etc.
\usepackage{bm}             % boldface symbols (\bm)
\usepackage{booktabs}       % improved horizontal lines in tables
\usepackage{caption}        % custom captions of floating objects
\usepackage{dcolumn}        % improved alignment of table columns
\usepackage{floatrow}       % custom float environments
\usepackage{graphicx}       % embedding of pictures
\usepackage{indentfirst}    % indent the first paragraph of a chapter
\usepackage[nopatch=item]{microtype}   % micro-typographic refinement
\usepackage{paralist}       % improved enumerate and itemize
\usepackage[nottoc]{tocbibind} % makes sure that bibliography and the lists
			    % of figures/tables are included in the table
			    % of contents
\usepackage{xcolor}         % typesetting in color

% Additional packages

\usepackage{longtable}
\usepackage{dirtree}
\usepackage{tikz}

% The hyperref package for clickable links in PDF and also for storing
% metadata to PDF (including the table of contents).
% Most settings are pre-set by the pdfx package.
\hypersetup{unicode}
\hypersetup{breaklinks=true}

% Packages for computer science theses
\usepackage{algpseudocode}  % part of algorithmicx package
\usepackage{algorithm}
\usepackage{fancyvrb}       % improved verbatim environment
\usepackage{listings}       % pretty-printer of source code

% You might want to use cleveref for references
% \usepackage{cleveref}


% Set up formatting of bibliography (references to literature)
% Details can be adjusted in macros.tex.
%
% BEWARE: Different fields of research and different university departments
% have their own customs regarding bibliography. Consult the bibliography
% format with your supervisor.
%
% The basic format according to the ISO 690 standard with numbered references
\usepackage[natbib,style=iso-numeric,sorting=none]{biblatex}
% ISO 690 with alphanumeric references (abbreviations of authors' names)
%\usepackage[natbib,style=iso-alphabetic]{biblatex}
% ISO 690 with references Author (year)
%\usepackage[natbib,style=iso-authoryear]{biblatex}
%
% Some fields of research prefer a simple format with numbered references
% (sorting=none tells that bibliography should be listed in citation order)
%\usepackage[natbib,style=numeric,sorting=none]{biblatex}
% Numbered references, but [1,2,3,4,5] is compressed to [1-5]
%\usepackage[natbib,style=numeric-comp,sorting=none]{biblatex}
% A simple format with alphanumeric references:
%\usepackage[natbib,style=alphabetic]{biblatex}

% Load the file with bibliography entries
\addbibresource{bibliography.bib}

\usepackage[acronym,toc=true,automake=immediate]{glossaries-extra}
\makeglossaries
\glssetcategoryattribute{acronym}{indexonlyfirst}{false}
\setabbreviationstyle[acronym,]{long-short}


% Our definitions of macros (see description inside)
\input macros.tex

\input acronyms-and-glossary.tex

%%% Title page and various mandatory informational pages
\begin{document}
\include{title}

%%% A page with automatically generated table of contents of the thesis

\tableofcontents

%%% Each chapter is kept in a separate file
\include{ch0preface}
\include{ch1analysis}
\include{ch2design}
\include{ch3implementation}
\include{ch4evaluation}
\include{chEepilog}


%%% Bibliography
\include{bibliography}

%%% Figures used in the thesis (consider if this is needed)
\listoffigures

%%% Tables used in the thesis (consider if this is needed)
%%% In mathematical theses, it could be better to move the list of tables to the beginning of the thesis.
\listoftables

%%% Abbreviations used in the thesis, if any, including their explanation
%%% In mathematical theses, it could be better to move the list of abbreviations to the beginning of the thesis.

\printglossary[type=\acronymtype]

%%% Doctoral theses must contain a list of author's publications
\ifx\ThesisType\TypePhD
\chapwithtoc{List of Publications}
\fi

%%% Attachments to the thesis, if any. Each attachment must be referred to
%%% at least once from the text of the thesis. Attachments are numbered.
%%%
%%% The printed version should preferably contain attachments, which can be
%%% read (additional tables and charts, supplementary text, examples of
%%% program output, etc.). The electronic version is more suited for attachments
%%% which will likely be used in an electronic form rather than read (program
%%% source code, data files, interactive charts, etc.). Electronic attachments
%%% should be uploaded to SIS. Allowed file formats are specified in provision
%%% of the rector no. 72/2017. Exceptions can be approved by faculty's coordinator.
\appendix
\chapter{Attachments}

\include{apx1listOfFunctions}
\include{apx2tranpilerCode}
\include{apx3performanceAnalysisCode}

\end{document}