DESCRIPTION

Package: miRSM
Type: Package
Title: Inferring miRNA sponge modules in heterogeneous data
Version: 2.1.2
Authors@R: 
    person(given = "Junpeng", 
           family = "Zhang", 
           role=c("aut", "cre"), 
           email = "zjp@dali.edu.cn")
Description: The package aims to identify miRNA sponge or ceRNA modules in heterogeneous data.
    It provides several functions to study miRNA sponge modules at single-sample 
    and multi-sample levels, including popular methods for inferring gene modules 
    (candidate miRNA sponge or ceRNA modules), and two functions to identify miRNA sponge 
    modules at single-sample and multi-sample levels, as well as several functions 
    to conduct modular analysis of miRNA sponge modules.
Depends: R (>= 4.4.0)
License: GPL-3
URL: https://github.com/zhangjunpeng411/miRSM
Encoding: UTF-8
biocViews: GeneExpression, BiomedicalInformatics, 
           Clustering, GeneSetEnrichment, Microarray, 
	         Software, GeneRegulation, GeneTarget
RoxygenNote: 7.3.2
Imports: WGCNA,
    flashClust,
    dynamicTreeCut,
    GFA,
    igraph,
    linkcomm,
    MCL,
    fabia,
    NMF,
    biclust,
    iBBiG,
    BicARE,
    isa2,
    s4vd,
    BiBitR,
    rqubic,
    Biobase,
    PMA,
    stats,
    dbscan,
    subspace,
    mclust,
    SOMbrero,
    ppclust,
    Rcpp,
    utils,
    SummarizedExperiment,
    GSEABase,
    org.Hs.eg.db,
    clusterProfiler,
    ReactomePA,
    DOSE,
    MatrixCorrelation,
    energy
Suggests: BiocStyle, 
    knitr,
    rmarkdown,
    testthat
VignetteBuilder: knitr
BugReports: https://github.com/zhangjunpeng411/miRSM/issues